Genome browser

	Gene model	Gene name	Description	Blast top hit		Blast2GO annotation	Scaffold
	pfu_aug1.0_131504.1_71776		High BLAST hits to various ...	gi|242025118|ref|XP_0024329...	T-box protein, putative [Pe...	–	scaffold131504.1
	pfu_aug1.0_192.1_22046	ADMP-like	NCBI BLASTP hit to ref|NP_0...	gi|259013378|ref|NP_0011583...	anti dorsalizing morphogene...	–	scaffold192.1
	pfu_aug1.0_192.1_22046	ADMP-like	NCBI BLASTP hit to ref|NP_0...	gi|259013378|ref|NP_0011583...	anti dorsalizing morphogene...	–	scaffold192.1
	pfu_aug1.0_23302.1_54889	aldehyde dehydrogenase family 8-like	NCBI BLASTP hit to ref|XP_0...	gi|348506285|ref|XP_0034406...	aldehyde dehydrogenase fam...	–	scaffold23302.1
	pfu_aug1.0_5683.1_02051	BAMBI-like	NCBI BLASTP hit to ref|XP_0...	gi|260788949|ref|XP_0025895...	hypothetical protein BRAFLD...	–	scaffold5683.1
	pfu_aug1.0_13057.1_17948	barH-like 1	High BLAST hits to various ...	gi|348518034|ref|XP_0034465...	homeobox protein BarH-like...	–	scaffold13057.1
	pfu_aug1.0_257.1_50753	BMP type1 receptor	NCBI blastp hit to |CAE1191...	gi|33352160|emb|CAE11917.1|	BMP type 1b receptor [Crass...	–	scaffold257.1
	pfu_aug1.0_2637.1_30198	bmp10-like	NCBI BLASTP hit to emb|CAD6...	gi|28475273|emb|CAD67715.1|	GDF3 precursor [Crassostrea...	–	scaffold2637.1
	pfu_aug1.0_43625.1_63151	bmp3-like	NCBI BLASTP hit to gb|ACF93...	gi|194718235|gb|ACF93445.1|	bone morphogenetic protein ...	–	scaffold43625.1
	pfu_aug1.0_102538.1_06302	bmp3-like	NCBI BLASTP hit to ref|XP_0...	gi|194206177|ref|XP_0014948...	bone morphogenetic protein...	–	scaffold102538.1
	pfu_aug1.0_43625.1_63151	bmp3B	NCBI blastp hit to gb|ACF93...	gi|194718235|gb|ACF93445.1|	bone morphogenetic protein ...	–	scaffold43625.1
	pfu_aug1.0_790.1_51081	dpp-bmp2/4	NCBI BLASTP hit to dbj|BAG6...	gi|46518286|dbj|BAD16731.1|	bone morphogenetic protein-...	–	scaffold790.1
	pfu_aug1.0_307148.1_36000	engrailed	The best hit to J03066.1 Ho...	gi|1170318|sp|P09075.3|HME6...	Homeobox protein E60	–	scaffold307148.1
	pfu_aug1.0_8460.1_60436	Eomesodermin	BLAST hits to various organ...	gi|11994948|dbj|BAB19985.1|	Pf-TBRAIN [Ptychodera flava]	–	scaffold8460.1
	pfu_aug1.0_622.1_36612	fgf8/17/18-like	NCBI BLASTP hit to ref|NP_0...	–	–	–	scaffold622.1
	pfu_aug1.0_1303.1_07891	FGFR	NCBI blastp hit to dbj|BAI6...	gi|284999805|dbj|BAI67805.1|	fibroblast growth factor re...	–	scaffold1303.1
	pfu_aug1.0_87126.1_42186	frizzled-1/2/7	NCBI BLASTP hit to ref|NP_0...	gi|344268671|ref|XP_0034061...	frizzled-7 [Loxodonta afri...	–	scaffold87126.1
	pfu_aug1.0_3031.1_44550	frizzled-4	NCBI BLASTP hit to ref|XP_0...	gi|260834485|ref|XP_0026122...	hypothetical protein BRAFLD...	–	scaffold3031.1
	pfu_aug1.0_2817.1_30257	gastrulation brain homeobox	It is the best hit to XM_00...	gi|260828235|ref|XP_0026090...	nk homeobox 7 [Branchiostom...	–	scaffold2817.1
	pfu_aug1.0_6051.1_16824	GDF2-like	NCBI BLASTP hit to emb|CAD6...	gi|28475271|emb|CAD67714.1|	GDF2 precursor [Crassostrea...	–	scaffold6051.1
	pfu_aug1.0_4752.1_16501	goosecoid	goosecoid (gsc)early develo...	–	–	–	scaffold4752.1
	pfu_aug1.0_424.1_50858	hedgehog	GenBank: EU394706.1 Lottia ...	gi|21518666|gb|AAM60752.1|A...	hedgehog [Patella vulgata]	–	scaffold424.1
	pfu_aug1.0_2973.1_59082	hex	The best hit to EU196052.1 ...	gi|45382607|ref|NP_990583.1|	hematopoietically-expressed...	–	scaffold2973.1
	pfu_aug1.0_2973.1_59082	hex	High BLAST hits with variou...	gi|45382607|ref|NP_990583.1|	hematopoietically-expressed...	–	scaffold2973.1
	pfu_aug1.0_2046.1_29956	Hox1-like	NCBI BLASTP hit to dbj|BAK4...	gi|336390933|dbj|BAK40158.1|	Hox1 [Nipponacmea fuscoviri...	–	scaffold2046.1
	pfu_aug1.0_17634.1_61730	iroquois	It is the best hit to XM_00...	gi|240960568|ref|XP_0024005...	Iroquois-class homeobox pro...	–	scaffold17634.1
	pfu_aug1.0_3809.1_30540	latrophilin-like	NCBI blastp hit to ref|XP_0...	gi|291240728|ref|XP_0027402...		–	scaffold3809.1
	pfu_aug1.0_5181.1_30887	lhx1/5	highest Blast hit toGU16942...	gi|345132131|gb|AEN75258.1|	Lim1 [Neanthes arenaceodent...	–	scaffold5181.1
	pfu_aug1.0_4230.1_16321	mad-like	NCBI BLASTP hit to emb|CAD9...	gi|40642978|emb|CAD90766.1|		–	scaffold4230.1
	pfu_aug1.0_13100.1_39443	Msx	High BLAST hits to various ...	gi|158936908|dbj|BAF91569.1|	Msx protein [Corbicula flum...	–	scaffold13100.1
	pfu_aug1.0_447.1_29262	nodal-like	NCBI BLASTP hit to gb|ACB42...	gi|171190136|gb|ACB42422.1|	TGFbeta family member nodal...	–	scaffold447.1
	pfu_aug1.0_812.1_22323	Notch	BLAST best hits to NCBI GU0...	gi|268054227|gb|ACY92600.1|	notch receptor [Saccoglossu...	–	scaffold812.1
	pfu_aug1.0_9129.1_09893	Notch	BLAST best hits to NCBI AF0...	gi|2570351|gb|AAB82088.1|	notch homolog [Lytechinus v...	–	scaffold9129.1
	pfu_aug1.0_4087.1_16284	notch	BLASTP best hit to NCBI XP...	gi|291234019|ref|XP_0027369...		–	scaffold4087.1
	pfu_aug1.0_588.1_07574	nuclear receptor 2/4 (Tr2/4)-like	NCBI BLASTP hit to ref|NP_5...	gi|20589472|ref|NP_571255.1|	nuclear receptor subfamily ...	–	scaffold588.1
	pfu_aug1.0_595.1_65534	OTX	BLAST best hits to NCBI AF4...	gi|74100011|gb|AAZ99218.1|	orthodenticle-like protein ...	–	scaffold595.1
	pfu_aug1.0_5322.1_16629	Patched	NCBI Blastp hit to gb|EFX90...	gi|321479419|gb|EFX90375.1|	putative hedgehog receptor ...	–	scaffold5322.1
	pfu_aug1.0_16816.1_54344	Pax-2/5/8	BLAST best hits to NCBI NM_...	gi|334313412|ref|XP_0013770...		–	scaffold16816.1
	pfu_aug1.0_19663.1_61932	Pax-2/5/8	BLAST best hits to NCBI XM_...	gi|301612842|ref|XP_0029359...	paired box protein Pax-5 i...	–	scaffold19663.1
	pfu_aug1.0_406.1_65408	Pax-2/5/8	BLAST best hits to NCBI AJ5...	gi|27528344|emb|CAD43608.1|	paired box protein [Platyne...	–	scaffold406.1
	pfu_aug1.0_30445.1_26527	Pax-6	BLAST hits to AM422131.1 an...	gi|291227879|ref|XP_0027339...	uncharacterized protein LO...	–	scaffold30445.1
	pfu_aug1.0_8418.1_67856	PAX-6_like	BLAST hits to NM_001168156....	gi|194869847|ref|XP_0019725...	GG13831 [Drosophila erecta]	–	scaffold8418.1
	pfu_aug1.0_28617.1_26433	PAX6_like	BLAST hits to GU224214.1 an...	gi|195012799|ref|XP_0019837...	GH16064 [Drosophila grimshawi]	–	scaffold28617.1
	pfu_aug1.0_5991.1_16813	pentagone-like	NCBI BLASTP hit to ref|XP_0...	gi|241649866|ref|XP_0024101...	hypothetical protein IscW_I...	–	scaffold5991.1
	pfu_aug1.0_7478.1_31393	pitx-likeA	NCBI BLASTP hit to gb|ADI48...	gi|297595306|gb|ADI48168.1|	Pitx [Crepidula fornicata]	–	scaffold7478.1
	pfu_aug1.0_7478.1_31392	pitx-likeB	NCBI BLASTP hit to gb|AAH73...	gi|148234542|ref|NP_0010817...	paired-like homeodomain 2 [...	–	scaffold7478.1
	pfu_aug1.0_9305.1_68025	rent	The best hit to NM_00116801...	gi|49659002|emb|CAD37941.1|	homeobox protein HOXa1 [Sub...	–	scaffold9305.1
	pfu_aug1.0_507.1_36564	retinal dehydrogenase 2	NCBI BLASTP hit to gb|ACL79...	gi|220067263|gb|ACL79834.1|	retinal dehydrogenase [Lymn...	–	scaffold507.1
	pfu_aug1.0_1605.1_15546	retinal homeobox	It is the best hit to XM_00...	gi|126343736|ref|XP_0013799...	paired box protein Pax-7-l...	–	scaffold1605.1
	pfu_aug1.0_806.1_22307	six1/2	Highest BLAST hit toNM_0011...	gi|291230538|ref|XP_0027352...		–	scaffold806.1
	pfu_aug1.0_8342.1_45842	six4/5	Highest BLAST hit toEF19574...	gi|291231307|ref|XP_0027356...	homeobox protein SIX4-like...	–	scaffold8342.1
	pfu_aug1.0_17692.1_47118	smoothened	NCBI blastp hit to gb|AES07...	gi|301755274|ref|XP_0029134...		–	scaffold17692.1
	pfu_aug1.0_5975.1_59906	snail-like	NCBI BLASTP hit to gb|AAL0...	gi|17223770|gb|AAL06240.1|	Sna1 [Patella vulgata]	–	scaffold5975.1
	pfu_aug1.0_4847.1_59628	sox2	Simple NJ tree shows an aff...	gi|229001906|emb|CAY12631.1|	SRY-related HMG box B prote...	–	scaffold4847.1
	pfu_aug1.0_802.1_00500	sox2	Simple NJ tree shows an aff...	gi|340025228|gb|AEK27011.1|	SRY-box containing protein ...	–	scaffold802.1
	pfu_aug1.0_2082.1_22863	spalt-like	NCBI BLASTP hit to ref|XP_0...	gi|332227695|ref|XP_0032630...		–	scaffold2082.1
	pfu_aug1.0_3628.1_66754	sprouty	Best hit to Ixodes scapular...	gi|148231127|ref|NP_0010822...	sprouty homolog 2 [Xenopus ...	–	scaffold3628.1
	pfu_aug1.0_595.1_65533	Tbx1/10	Blast hits to Tbx1 and Tbx1...	–	–	–	scaffold595.1
	pfu_aug1.0_131504.1_71776	Tbx1/10	High BLAST hits to various ...	gi|242025118|ref|XP_0024329...	T-box protein, putative [Pe...	–	scaffold131504.1
	pfu_aug1.0_52017.1_63412	Tbx1/10	High Blast hits to various ...	gi|194218551|ref|XP_0019170...		–	scaffold52017.1
	pfu_aug1.0_43992.1_19903	Tbx19	BLAST hits to brachyury and...	–	–	–	scaffold43992.1
	pfu_aug1.0_21909.1_04185	Tbx19/Bra	Blast hits to Tbx19 and Tbx...	–	–	–	scaffold21909.1
	pfu_aug1.0_1374.1_58471	Tbx2/3	BLAST hits to Tbx2 and Tbx3...	gi|115668687|ref|XP_797010.2|		–	scaffold1374.1
	pfu_aug1.0_217860.1_28660	Tbx2/3	Blast hits to Tbx2 and Tbx3...	–	–	–	scaffold217860.1
	pfu_aug1.0_294.1_36466	Tbx2/3	BLAST Hits on various Tbx2 ...	–	–	–	scaffold294.1
	pfu_aug1.0_1057.1_65765	Tbx2/3/20?	Blast hits to Tbx 2, but si...	gi|45383824|ref|NP_989475.1|	T-box transcription factor ...	–	scaffold1057.1
	pfu_aug1.0_185163.1_21423	Tbx20	Simple NJ tree shows an aff...	–	–	–	scaffold185163.1
	pfu_aug1.0_1057.1_65763	Tbx20	Blast hits and simple NJ tr...	–	–	–	scaffold1057.1
	pfu_aug1.0_15148.1_32515	Tbx20	BLAST hits and simple NJ tr...	–	–	–	scaffold15148.1
	pfu_aug1.0_1057.1_65766	Tbx20	Blast hits and simple NJ tr...	gi|261337146|ref|NP_0011596...	T-box transcription factor ...	–	scaffold1057.1
	pfu_aug1.0_33105.1_62721	Tbx21	Blast hits to Tbx21, Eomes,...	–	–	–	scaffold33105.1
	pfu_aug1.0_12151.1_60997	Tbx21	Blast hits to Eomes, Tbx21,...	gi|195129081|ref|XP_0020089...	GI11508 [Drosophila mojaven...	–	scaffold12151.1
	pfu_aug1.0_2408.1_15802	tlx	Best hit to T-cell leukemia...	gi|146217159|gb|ABQ10643.1|	homeodomain protein Tlx [Pl...	–	scaffold2408.1
	pfu_aug1.0_9305.1_68025	vent	Highest BLAST hit to of Xe...	gi|49659002|emb|CAD37941.1|	homeobox protein HOXa1 [Sub...	–	scaffold9305.1
	pfu_aug1.0_4300.1_16336	vestigial-like	NCBI BLASTP hit to emb|CBN8...	gi|47086111|ref|NP_998440.1|	transcription cofactor vest...	–	scaffold4300.1

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