OIST Marine Genomics Unit Genome Browser

other developmental genes: Total 75 genes are annotated

Gene model	Gene name	Description	Blast top hit		Blast2GO annotation	Scaffold
pfu_aug1.0_131504.1_71776		High BLAST hits to various ...	gi\|242025118\|ref\|XP_0024329...	T-box protein, putative [Pe...	–	scaffold131504.1
pfu_aug1.0_192.1_22046	ADMP-like	NCBI BLASTP hit to ref\|NP_0...	gi\|259013378\|ref\|NP_0011583...	anti dorsalizing morphogene...	–	scaffold192.1
pfu_aug1.0_192.1_22046	ADMP-like	NCBI BLASTP hit to ref\|NP_0...	gi\|259013378\|ref\|NP_0011583...	anti dorsalizing morphogene...	–	scaffold192.1
pfu_aug1.0_23302.1_54889	aldehyde dehydrogenase family 8-like	NCBI BLASTP hit to ref\|XP_0...	gi\|348506285\|ref\|XP_0034406...	aldehyde dehydrogenase fam...	–	scaffold23302.1
pfu_aug1.0_5683.1_02051	BAMBI-like	NCBI BLASTP hit to ref\|XP_0...	gi\|260788949\|ref\|XP_0025895...	hypothetical protein BRAFLD...	–	scaffold5683.1
pfu_aug1.0_13057.1_17948	barH-like 1	High BLAST hits to various ...	gi\|348518034\|ref\|XP_0034465...	homeobox protein BarH-like...	–	scaffold13057.1
pfu_aug1.0_257.1_50753	BMP type1 receptor	NCBI blastp hit to \|CAE1191...	gi\|33352160\|emb\|CAE11917.1\|	BMP type 1b receptor [Crass...	–	scaffold257.1
pfu_aug1.0_2637.1_30198	bmp10-like	NCBI BLASTP hit to emb\|CAD6...	gi\|28475273\|emb\|CAD67715.1\|	GDF3 precursor [Crassostrea...	–	scaffold2637.1
pfu_aug1.0_43625.1_63151	bmp3-like	NCBI BLASTP hit to gb\|ACF93...	gi\|194718235\|gb\|ACF93445.1\|	bone morphogenetic protein ...	–	scaffold43625.1
pfu_aug1.0_102538.1_06302	bmp3-like	NCBI BLASTP hit to ref\|XP_0...	gi\|194206177\|ref\|XP_0014948...	bone morphogenetic protein...	–	scaffold102538.1
pfu_aug1.0_43625.1_63151	bmp3B	NCBI blastp hit to gb\|ACF93...	gi\|194718235\|gb\|ACF93445.1\|	bone morphogenetic protein ...	–	scaffold43625.1
pfu_aug1.0_790.1_51081	dpp-bmp2/4	NCBI BLASTP hit to dbj\|BAG6...	gi\|46518286\|dbj\|BAD16731.1\|	bone morphogenetic protein-...	–	scaffold790.1
pfu_aug1.0_307148.1_36000	engrailed	The best hit to J03066.1 Ho...	gi\|1170318\|sp\|P09075.3\|HME6...	Homeobox protein E60	–	scaffold307148.1
pfu_aug1.0_8460.1_60436	Eomesodermin	BLAST hits to various organ...	gi\|11994948\|dbj\|BAB19985.1\|	Pf-TBRAIN [Ptychodera flava]	–	scaffold8460.1
pfu_aug1.0_622.1_36612	fgf8/17/18-like	NCBI BLASTP hit to ref\|NP_0...	–	–	–	scaffold622.1
pfu_aug1.0_1303.1_07891	FGFR	NCBI blastp hit to dbj\|BAI6...	gi\|284999805\|dbj\|BAI67805.1\|	fibroblast growth factor re...	–	scaffold1303.1
pfu_aug1.0_87126.1_42186	frizzled-1/2/7	NCBI BLASTP hit to ref\|NP_0...	gi\|344268671\|ref\|XP_0034061...	frizzled-7 [Loxodonta afri...	–	scaffold87126.1
pfu_aug1.0_3031.1_44550	frizzled-4	NCBI BLASTP hit to ref\|XP_0...	gi\|260834485\|ref\|XP_0026122...	hypothetical protein BRAFLD...	–	scaffold3031.1
pfu_aug1.0_2817.1_30257	gastrulation brain homeobox	It is the best hit to XM_00...	gi\|260828235\|ref\|XP_0026090...	nk homeobox 7 [Branchiostom...	–	scaffold2817.1
pfu_aug1.0_6051.1_16824	GDF2-like	NCBI BLASTP hit to emb\|CAD6...	gi\|28475271\|emb\|CAD67714.1\|	GDF2 precursor [Crassostrea...	–	scaffold6051.1
pfu_aug1.0_4752.1_16501	goosecoid	goosecoid (gsc)early develo...	–	–	–	scaffold4752.1
pfu_aug1.0_424.1_50858	hedgehog	GenBank: EU394706.1 Lottia ...	gi\|21518666\|gb\|AAM60752.1\|A...	hedgehog [Patella vulgata]	–	scaffold424.1
pfu_aug1.0_2973.1_59082	hex	The best hit to EU196052.1 ...	gi\|45382607\|ref\|NP_990583.1\|	hematopoietically-expressed...	–	scaffold2973.1
pfu_aug1.0_2973.1_59082	hex	High BLAST hits with variou...	gi\|45382607\|ref\|NP_990583.1\|	hematopoietically-expressed...	–	scaffold2973.1
pfu_aug1.0_2046.1_29956	Hox1-like	NCBI BLASTP hit to dbj\|BAK4...	gi\|336390933\|dbj\|BAK40158.1\|	Hox1 [Nipponacmea fuscoviri...	–	scaffold2046.1
pfu_aug1.0_17634.1_61730	iroquois	It is the best hit to XM_00...	gi\|240960568\|ref\|XP_0024005...	Iroquois-class homeobox pro...	–	scaffold17634.1
pfu_aug1.0_3809.1_30540	latrophilin-like	NCBI blastp hit to ref\|XP_0...	gi\|291240728\|ref\|XP_0027402...		–	scaffold3809.1
pfu_aug1.0_5181.1_30887	lhx1/5	highest Blast hit toGU16942...	gi\|345132131\|gb\|AEN75258.1\|	Lim1 [Neanthes arenaceodent...	–	scaffold5181.1
pfu_aug1.0_4230.1_16321	mad-like	NCBI BLASTP hit to emb\|CAD9...	gi\|40642978\|emb\|CAD90766.1\|		–	scaffold4230.1
pfu_aug1.0_13100.1_39443	Msx	High BLAST hits to various ...	gi\|158936908\|dbj\|BAF91569.1\|	Msx protein [Corbicula flum...	–	scaffold13100.1
pfu_aug1.0_447.1_29262	nodal-like	NCBI BLASTP hit to gb\|ACB42...	gi\|171190136\|gb\|ACB42422.1\|	TGFbeta family member nodal...	–	scaffold447.1
pfu_aug1.0_812.1_22323	Notch	BLAST best hits to NCBI GU0...	gi\|268054227\|gb\|ACY92600.1\|	notch receptor [Saccoglossu...	–	scaffold812.1
pfu_aug1.0_9129.1_09893	Notch	BLAST best hits to NCBI AF0...	gi\|2570351\|gb\|AAB82088.1\|	notch homolog [Lytechinus v...	–	scaffold9129.1
pfu_aug1.0_4087.1_16284	notch	BLASTP best hit to NCBI XP...	gi\|291234019\|ref\|XP_0027369...		–	scaffold4087.1
pfu_aug1.0_588.1_07574	nuclear receptor 2/4 (Tr2/4)-like	NCBI BLASTP hit to ref\|NP_5...	gi\|20589472\|ref\|NP_571255.1\|	nuclear receptor subfamily ...	–	scaffold588.1
pfu_aug1.0_595.1_65534	OTX	BLAST best hits to NCBI AF4...	gi\|74100011\|gb\|AAZ99218.1\|	orthodenticle-like protein ...	–	scaffold595.1
pfu_aug1.0_5322.1_16629	Patched	NCBI Blastp hit to gb\|EFX90...	gi\|321479419\|gb\|EFX90375.1\|	putative hedgehog receptor ...	–	scaffold5322.1
pfu_aug1.0_16816.1_54344	Pax-2/5/8	BLAST best hits to NCBI NM_...	gi\|334313412\|ref\|XP_0013770...		–	scaffold16816.1
pfu_aug1.0_19663.1_61932	Pax-2/5/8	BLAST best hits to NCBI XM_...	gi\|301612842\|ref\|XP_0029359...	paired box protein Pax-5 i...	–	scaffold19663.1
pfu_aug1.0_406.1_65408	Pax-2/5/8	BLAST best hits to NCBI AJ5...	gi\|27528344\|emb\|CAD43608.1\|	paired box protein [Platyne...	–	scaffold406.1
pfu_aug1.0_30445.1_26527	Pax-6	BLAST hits to AM422131.1 an...	gi\|291227879\|ref\|XP_0027339...	uncharacterized protein LO...	–	scaffold30445.1
pfu_aug1.0_8418.1_67856	PAX-6_like	BLAST hits to NM_001168156....	gi\|194869847\|ref\|XP_0019725...	GG13831 [Drosophila erecta]	–	scaffold8418.1
pfu_aug1.0_28617.1_26433	PAX6_like	BLAST hits to GU224214.1 an...	gi\|195012799\|ref\|XP_0019837...	GH16064 [Drosophila grimshawi]	–	scaffold28617.1
pfu_aug1.0_5991.1_16813	pentagone-like	NCBI BLASTP hit to ref\|XP_0...	gi\|241649866\|ref\|XP_0024101...	hypothetical protein IscW_I...	–	scaffold5991.1
pfu_aug1.0_7478.1_31393	pitx-likeA	NCBI BLASTP hit to gb\|ADI48...	gi\|297595306\|gb\|ADI48168.1\|	Pitx [Crepidula fornicata]	–	scaffold7478.1
pfu_aug1.0_7478.1_31392	pitx-likeB	NCBI BLASTP hit to gb\|AAH73...	gi\|148234542\|ref\|NP_0010817...	paired-like homeodomain 2 [...	–	scaffold7478.1
pfu_aug1.0_9305.1_68025	rent	The best hit to NM_00116801...	gi\|49659002\|emb\|CAD37941.1\|	homeobox protein HOXa1 [Sub...	–	scaffold9305.1
pfu_aug1.0_507.1_36564	retinal dehydrogenase 2	NCBI BLASTP hit to gb\|ACL79...	gi\|220067263\|gb\|ACL79834.1\|	retinal dehydrogenase [Lymn...	–	scaffold507.1
pfu_aug1.0_1605.1_15546	retinal homeobox	It is the best hit to XM_00...	gi\|126343736\|ref\|XP_0013799...	paired box protein Pax-7-l...	–	scaffold1605.1
pfu_aug1.0_806.1_22307	six1/2	Highest BLAST hit toNM_0011...	gi\|291230538\|ref\|XP_0027352...		–	scaffold806.1
pfu_aug1.0_8342.1_45842	six4/5	Highest BLAST hit toEF19574...	gi\|291231307\|ref\|XP_0027356...	homeobox protein SIX4-like...	–	scaffold8342.1
pfu_aug1.0_17692.1_47118	smoothened	NCBI blastp hit to gb\|AES07...	gi\|301755274\|ref\|XP_0029134...		–	scaffold17692.1
pfu_aug1.0_5975.1_59906	snail-like	NCBI BLASTP hit to gb\|AAL0...	gi\|17223770\|gb\|AAL06240.1\|	Sna1 [Patella vulgata]	–	scaffold5975.1
pfu_aug1.0_4847.1_59628	sox2	Simple NJ tree shows an aff...	gi\|229001906\|emb\|CAY12631.1\|	SRY-related HMG box B prote...	–	scaffold4847.1
pfu_aug1.0_802.1_00500	sox2	Simple NJ tree shows an aff...	gi\|340025228\|gb\|AEK27011.1\|	SRY-box containing protein ...	–	scaffold802.1
pfu_aug1.0_2082.1_22863	spalt-like	NCBI BLASTP hit to ref\|XP_0...	gi\|332227695\|ref\|XP_0032630...		–	scaffold2082.1
pfu_aug1.0_3628.1_66754	sprouty	Best hit to Ixodes scapular...	gi\|148231127\|ref\|NP_0010822...	sprouty homolog 2 [Xenopus ...	–	scaffold3628.1
pfu_aug1.0_595.1_65533	Tbx1/10	Blast hits to Tbx1 and Tbx1...	–	–	–	scaffold595.1
pfu_aug1.0_131504.1_71776	Tbx1/10	High BLAST hits to various ...	gi\|242025118\|ref\|XP_0024329...	T-box protein, putative [Pe...	–	scaffold131504.1
pfu_aug1.0_52017.1_63412	Tbx1/10	High Blast hits to various ...	gi\|194218551\|ref\|XP_0019170...		–	scaffold52017.1
pfu_aug1.0_43992.1_19903	Tbx19	BLAST hits to brachyury and...	–	–	–	scaffold43992.1
pfu_aug1.0_21909.1_04185	Tbx19/Bra	Blast hits to Tbx19 and Tbx...	–	–	–	scaffold21909.1
pfu_aug1.0_1374.1_58471	Tbx2/3	BLAST hits to Tbx2 and Tbx3...	gi\|115668687\|ref\|XP_797010.2\|		–	scaffold1374.1
pfu_aug1.0_217860.1_28660	Tbx2/3	Blast hits to Tbx2 and Tbx3...	–	–	–	scaffold217860.1
pfu_aug1.0_294.1_36466	Tbx2/3	BLAST Hits on various Tbx2 ...	–	–	–	scaffold294.1
pfu_aug1.0_1057.1_65765	Tbx2/3/20?	Blast hits to Tbx 2, but si...	gi\|45383824\|ref\|NP_989475.1\|	T-box transcription factor ...	–	scaffold1057.1
pfu_aug1.0_185163.1_21423	Tbx20	Simple NJ tree shows an aff...	–	–	–	scaffold185163.1
pfu_aug1.0_1057.1_65763	Tbx20	Blast hits and simple NJ tr...	–	–	–	scaffold1057.1
pfu_aug1.0_15148.1_32515	Tbx20	BLAST hits and simple NJ tr...	–	–	–	scaffold15148.1
pfu_aug1.0_1057.1_65766	Tbx20	Blast hits and simple NJ tr...	gi\|261337146\|ref\|NP_0011596...	T-box transcription factor ...	–	scaffold1057.1
pfu_aug1.0_33105.1_62721	Tbx21	Blast hits to Tbx21, Eomes,...	–	–	–	scaffold33105.1
pfu_aug1.0_12151.1_60997	Tbx21	Blast hits to Eomes, Tbx21,...	gi\|195129081\|ref\|XP_0020089...	GI11508 [Drosophila mojaven...	–	scaffold12151.1
pfu_aug1.0_2408.1_15802	tlx	Best hit to T-cell leukemia...	gi\|146217159\|gb\|ABQ10643.1\|	homeodomain protein Tlx [Pl...	–	scaffold2408.1
pfu_aug1.0_9305.1_68025	vent	Highest BLAST hit to of Xe...	gi\|49659002\|emb\|CAD37941.1\|	homeobox protein HOXa1 [Sub...	–	scaffold9305.1
pfu_aug1.0_4300.1_16336	vestigial-like	NCBI BLASTP hit to emb\|CBN8...	gi\|47086111\|ref\|NP_998440.1\|	transcription cofactor vest...	–	scaffold4300.1

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