publication
For those who utilize our genome and transcriptome data, please cite:
Shoguchi, E., Shinzato, C., Kawashima, T., Gyoja, F., Mungpakdee, S., Koyanagi, R., Takeuchi, T., Hisata, K., Tanaka, M., Fujiwara, M., Hamada, M., Azadeh, S., Fujie, M., Usami, T., Goto, H., Yamasaki, S., Arakaki, N., Suzuki, Y., Sugano, S., Toyoda, A., Kuroki, Y., Fujiyama, A., Medina, M., Coffroth, M. A., Bhattacharya, D., and Satoh, N.
Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure.
Current Biology 23, 1399-1408.
Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure.
Current Biology 23, 1399-1408.
Assembled Transcriptome v1.0
| symbB1_v1.0.transcriptome_assembly.fa.gz | Assembled Transcriptome v1.0 with Velvet/ Oasis assembler, (compressed with gzip) |
| symbB1_v1.0.transcriptome_trinity.fa.gz | (supplement) Assembled Transcriptome v1.0 with Trinity assembler, (compressed with gzip) |
Assembly v1.0
| symbB.v1.2.augustus.mrna.fa.gz | Predicted Trascripts for Genome Assembly ver 1.0, (compressed with gzip) |
| symbB.v1.2.augustus.prot.fa.gz | Predicted Proteins for Genome Assembly ver 1.0, (compressed with gzip) |
| symbB.v1.0.genome.fa.gz | Genome Assembly ver 1.0, (compressed with gzip) (with GAP sequences) |
| symbB.v1.2.augustus.gff3.gz | Predicted Genes for Genome Assembly ver 1.0, (compressed with gzip) |
Raw Data
| DDBJ Read Archive DRA000910 | Link To the DDBJ Read Archive |
| 120221_EAS74_lane1.tgz | SymbB1 rowdata |
| 120221_EAS74_lane2.tgz | symbB1 raw data |
| 121220_SN7001290_0145_AC1JR5ACXX.tar.gz | symbB1 raw data |
| fq_clipped.tar | symbB1 raw data |
| symbB_rna_wgs_pe_illumina_20111025_s_1_1.fq | symbB1 raw data |
| symbB_rna_wgs_pe_illumina_20111025_s_2_1.fq | symbB1 raw data |
| symbB_rna_wgs_pe_illumina_20111025_memo.jp | Document for the Raw data |
| symbB_rna_wgs_pe_illumina_20111025_memo.en | Document for the Raw data (English) |
TSS analysis
| symb_noSL.gff.gz | |
| symb_SL.gff.gz | |
| symb_sorted_SL_merge.bam.gz | |
| symb_sorted_noSL_merge.bam.gz |