Symbiodinium minutum ver. symb_aug_v1.120123

OIST Marine Genomics Unit since 2008

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publication
For those who utilize our genome and transcriptome data, please cite:
Shoguchi, E., Shinzato, C., Kawashima, T., Gyoja, F., Mungpakdee, S., Koyanagi, R., Takeuchi, T., Hisata, K., Tanaka, M., Fujiwara, M., Hamada, M., Azadeh, S., Fujie, M., Usami, T., Goto, H., Yamasaki, S., Arakaki, N., Suzuki, Y., Sugano, S., Toyoda, A., Kuroki, Y., Fujiyama, A., Medina, M., Coffroth, M. A., Bhattacharya, D., and Satoh, N.
Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure.
Current Biology 23, 1399-1408. Pubmed
Assembled Transcriptome v1.0
symbB1_v1.0.transcriptome_assembly.fa.gz Assembled Transcriptome v1.0 with Velvet/ Oasis assembler, (compressed with gzip)
symbB1_v1.0.transcriptome_trinity.fa.gz (supplement) Assembled Transcriptome v1.0 with Trinity assembler, (compressed with gzip)

Assembly v1.0
symbB.v1.2.augustus.mrna.fa.gz Predicted Trascripts for Genome Assembly ver 1.0, (compressed with gzip)
symbB.v1.2.augustus.prot.fa.gz Predicted Proteins for Genome Assembly ver 1.0, (compressed with gzip)
symbB.v1.0.genome.fa.gz Genome Assembly ver 1.0, (compressed with gzip) (with GAP sequences)
symbB.v1.2.augustus.gff3.gz Predicted Genes for Genome Assembly ver 1.0, (compressed with gzip)

Raw Data
DDBJ Read Archive DRA000910 Link To the DDBJ Read Archive
120221_EAS74_lane1.tgz SymbB1 rowdata
120221_EAS74_lane2.tgz symbB1 raw data
121220_SN7001290_0145_AC1JR5ACXX.tar.gz symbB1 raw data
fq_clipped.tar symbB1 raw data
symbB_rna_wgs_pe_illumina_20111025_s_1_1.fq symbB1 raw data
symbB_rna_wgs_pe_illumina_20111025_s_2_1.fq symbB1 raw data
symbB_rna_wgs_pe_illumina_20111025_memo.jp Document for the Raw data
symbB_rna_wgs_pe_illumina_20111025_memo.en Document for the Raw data (English)

TSS analysis
symb_noSL.gff.gz
symb_SL.gff.gz
symb_sorted_SL_merge.bam.gz
symb_sorted_noSL_merge.bam.gz

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