Gene
Gene Model ID | pfu_aug1.0_1027.1_22407 |
---|---|
Locus | scaffold1027.1 : 15896 ... 31853 : + |
To GenomeBrowser | scaffold1027.1:15896..31853 |
Genes list of scaffold | scaffold1027.1 |
Synonym | pfu_aug2.0_21.1_03433 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1027.1_22407.t1 | 1 | 1 | Peptidase_M24 | 126 | 296 | 7.5e-36 | 123.6 | 7.0e-40 | 1.0e-35 | 123.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1027.1_22407.t1 | gi|260814362|ref|XP_002601884.1| | hypothetical protein BRAFLDRAFT_59647 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
Dshape | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
Transcript
Transcript ID | pfu_aug1.0_1027.1_22407.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1027.1_22407.t1 atgcgggattttccgtgtcccggctgggacagatatttttggtcgcaaatgcgggacattttttgtcccggccgggacaa tggcaaaaaagttaaataccacgaagtttgcctaagacgcacaacttcgacaatgttagggaccatacaatttcctggtg agtcgaataaaacggactgctttaaagctttttggaatgaacataagaaggtgcacaagaaagcaagtaaggccatgata attaaatattttgttttacgacccctggaagtaccaatatggagagtactgattgtgttaagatatgactttacagacac caaagagaaccataccagatcacattccccgaccagattatgccgaacatcccgaaggtctgtaaatgaagtgatttgtc acggtatacctgacttaaggcctctagaagatggagacatagttaatattgatatcacagtgtttcacagaggttaccat ggtgacttaaacgaaacattctttgttggaaatgttgatgataaaagcaaaaagctggtaaaaactacacatgaatgttt gaagcaggcaatagatgaagtaaagcctggagttcgatacagagaaatgggtaatattatacagaagcacgctcaggcta acggcttctcagtggtcagaagttactgtggacatggcatacaccagttgtttcacacagcacccagtgttcctcattat agcaaaaacaaggctataggagtgatgaaacctggacattctttcaccatagagcctatgatttcagaaggaacttggcg agacgagatgtggccagacaactggacagcggtcactcaagatggaaaaagatctgcacaatttgaacacactctattag taactgacactggatgtgaaattctcacgcgacggagagacaatgacggaaaaccacattttatggacaaagaatga |
Protein
Protein ID | pfu_aug1.0_1027.1_22407.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1027.1_22407.t1 MRDFPCPGWDRYFWSQMRDIFCPGRDNGKKVKYHEVCLRRTTSTMLGTIQFPGESNKTDCFKAFWNEHKKVHKKASKAMI IKYFVLRPLEVPIWRVLIVLRYDFTDTKENHTRSHSPTRLCRTSRRSVNEVICHGIPDLRPLEDGDIVNIDITVFHRGYH GDLNETFFVGNVDDKSKKLVKTTHECLKQAIDEVKPGVRYREMGNIIQKHAQANGFSVVRSYCGHGIHQLFHTAPSVPHY SKNKAIGVMKPGHSFTIEPMISEGTWRDEMWPDNWTAVTQDGKRSAQFEHTLLVTDTGCEILTRRRDNDGKPHFMDKE |