Gene
Gene Model ID | pfu_aug1.0_11.1_50548 |
---|---|
Locus | scaffold11.1 : 108578 ... 117575 : - |
To GenomeBrowser | scaffold11.1:108578..117575 |
Genes list of scaffold | scaffold11.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_11.1_50548.t1 | 2 | 1 | Fringe | 124 | 251 | 7.1e-21 | 74.5 | 1.2e-24 | 8.6e-21 | 74.2 |
pfu_aug1.0_11.1_50548.t1 | 2 | 2 | Fringe | 278 | 305 | 7.1e-21 | 74.5 | 0.23 | 1700.0 | -2.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_11.1_50548.t1 | gi|118343806|ref|NP_001071719.1| | Fringe [Ciona intestinalis] | 6.0e-15 |
Transcript
Transcript ID | pfu_aug1.0_11.1_50548.t1 |
---|---|
Definition | - |
>pfu_aug1.0_11.1_50548.t1 atgcaccatttggtgctctattgagttcagtggaatagttccacctctagcttgctagggtccgtcgatgctcaattatg tgttcttttgttctgttctgcaaagaggaaacacttttcacaaagaatacgaaacaatagtcttttgtatcctttactac tggtcaattcaataacaatgtgctgtcgaattgaaaggatacgaaccagactttccgtattcattatcagctctttgatg atatgggtaatttttatcagtaatgaagattccgtcaaagaagtatttaacgaacgggaaatatctcgtgagttgaggga cgacaattttggaaacattcaaaacacgacagatgagagaccattcaacaaaataacattacaagatatcgtaatgaccg ttaggacaacaacgaaaaattccgaaacaagaatgaaagctttatttgagtcatggttaccatccgcctttgataagaca ccagacatcacatcatttggcaaaatttctaattgtgacgtcatatttgatcgcactgactttatgcgttgtcatgtttt ctattatgacgtcatgaaaaaggacctctgctgcaaaatgtccaaggaattgacattttttacgggaattgataagaagt ggtattgcctattcgatgacgatatgtacctcaatgttgacaatttagtaacattgctgagagactatgattataatggt ttgtggtacatcgggaaaaatgacagagagacaaagccacattacattccaagacaaaaatataaaggtaccaagattaa atcaaaagacatatttacgttttaccttttatcagatactttccaaaatgatacccgaatctatgtaccaaaagcgtatt ctataagagagcttgaatataccaaaacaatgaaaaatgttgatactatcaaaattaccccatga |
Protein
Protein ID | pfu_aug1.0_11.1_50548.t1 |
---|---|
Definition | - |
>pfu_aug1.0_11.1_50548.t1 MHHLVLYXVQWNSSTSSLLGSVDAQLCVLLFCSAKRKHFSQRIRNNSLLYPLLLVNSITMCCRIERIRTRLSVFIISSLM IWVIFISNEDSVKEVFNEREISRELRDDNFGNIQNTTDERPFNKITLQDIVMTVRTTTKNSETRMKALFESWLPSAFDKT PDITSFGKISNCDVIFDRTDFMRCHVFYYDVMKKDLCCKMSKELTFFTGIDKKWYCLFDDDMYLNVDNLVTLLRDYDYNG LWYIGKNDRETKPHYIPRQKYKGTKIKSKDIFTFYLLSDTFQNDTRIYVPKAYSIRELEYTKTMKNVDTIKITP |