Gene
Gene Model ID | pfu_aug1.0_123.1_50648 |
---|---|
Locus | scaffold123.1 : 1 ... 12935 : - |
To GenomeBrowser | scaffold123.1:1..12935 |
Genes list of scaffold | scaffold123.1 |
Synonym | pfu_aug2.0_744.1_14517 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_123.1_50648.t1 | 1 | 1 | Homeobox | 72 | 128 | 1.0e-22 | 79.5 | 1.0e-26 | 1.5e-22 | 78.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_123.1_50648.t1 | gi|22859614|emb|CAD45551.1| | goosecoid protein [Patella vulgata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
mantle | 1 |
mantleEdge | 1 |
Transcript
Transcript ID | pfu_aug1.0_123.1_50648.t1 |
---|---|
Definition | - |
>pfu_aug1.0_123.1_50648.t1 atgttggcggctgcagcggcggctagtggcacccactctgtcttctctatagataacatcctggcaccacgtccgtttct tgcccacagaccagcgccttatttcccttacccagcactcgcacatgcaccgcaagatatatttgctccatacagcccat ttccagggttgatgacggcagcggatcttgcacgcgcaggccagaaacggaagcgacgtcatcgtacgatcttcaccgaa gaacaattagaggaattggaagcaacttttcagaagactcactatccagatgtactgttacgagaagaacttgctatgaa gatagatttgaaggaagagagagttgaggtctggttcaaaaatcgtagagcgaaatggaggaaagtcaaaagagaagaag aagcagcgaaaaggtcatcgtctgatatgactccaacaaagcctctttctgagtgtaaagataaaggacagatatcaaac acagacgtacaatgtggacagacagacgtatcgttagaccagaatgtggactctgaccttagtgattgtcacagtgaaag aagtacagactcgcccaaaattgacatagaggaaaatgaagacagtgtaagtgacctacagggtgtaacagttccatttc ctacatcgctacaaaattctagtgcttcttcagacgaaattgcgtcatga |
Protein
Protein ID | pfu_aug1.0_123.1_50648.t1 |
---|---|
Definition | - |
>pfu_aug1.0_123.1_50648.t1 MLAAAAAASGTHSVFSIDNILAPRPFLAHRPAPYFPYPALAHAPQDIFAPYSPFPGLMTAADLARAGQKRKRRHRTIFTE EQLEELEATFQKTHYPDVLLREELAMKIDLKEERVEVWFKNRRAKWRKVKREEEAAKRSSSDMTPTKPLSECKDKGQISN TDVQCGQTDVSLDQNVDSDLSDCHSERSTDSPKIDIEENEDSVSDLQGVTVPFPTSLQNSSASSDEIAS |