Gene
Gene Model ID | pfu_aug1.0_1432.1_58498 |
---|---|
Locus | scaffold1432.1 : 55288 ... 58795 : - |
To GenomeBrowser | scaffold1432.1:55288..58795 |
Genes list of scaffold | scaffold1432.1 |
Synonym | pfu_aug2.0_560.1_00892 |
Manual annotation
Study field | Reproduction |
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Gene name | Pfu-bindin |
Description | Best hit to accession EF219425-219429 (Crassostrea gigas bindin precursor) 91 bits, 7e-17. Only F-lectin repeat region. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1432.1_58498.t1 | 1 | 1 | F5_F8_type_C | 37 | 154 | 2.6e-08 | 33.7 | 4.8e-12 | 3.6e-08 | 33.3 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
mantleEdge | 1 |
Transcript
Transcript ID | pfu_aug1.0_1432.1_58498.t1 |
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Definition | - |
>pfu_aug1.0_1432.1_58498.t1 atggcgtgttctgttttgatcttcgggctactgatatccgtaggtgggattcacctcgttcaaagtaacacaggattggt caacttagcatatggaaagcgcgtaactttaagctcaaactacaatcccccgtatcctggcgcaaacgcagtgaatggtg ttctctcagatcttgcacacactggtgctgaagataatccgtggctacggatcgatttaggagcagagtgttcgattcac gaaatcgaaatttttgcgagatcagactgttgtggttctcaactacacgacctagaagtatcagtcggcagatctcggag tcagatgtccgtatgtggtcatttcacgggacctgcgccttcaaacggtgcacgggttgcaatatggtgtccctactcca cggttggtcgctatgttgaagtgaaaattgtcaaggatagaaacaacgtactaacacccgctgaggtccttgtgtgggga aacccaaactgcatttaa |
Protein
Protein ID | pfu_aug1.0_1432.1_58498.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1432.1_58498.t1 MACSVLIFGLLISVGGIHLVQSNTGLVNLAYGKRVTLSSNYNPPYPGANAVNGVLSDLAHTGAEDNPWLRIDLGAECSIH EIEIFARSDCCGSQLHDLEVSVGRSRSQMSVCGHFTGPAPSNGARVAIWCPYSTVGRYVEVKIVKDRNNVLTPAEVLVWG NPNCI |