Gene
Gene Model ID | pfu_aug1.0_149.1_65264 |
---|---|
Locus | scaffold149.1 : 47887 ... 52135 : - |
To GenomeBrowser | scaffold149.1:47887..52135 |
Genes list of scaffold | scaffold149.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_149.1_65264.t1 | 2 | 1 | LRR_8 | 28 | 76 | 3.5e-11 | 42.6 | 2.2e-10 | 2.7e-07 | 30.2 |
pfu_aug1.0_149.1_65264.t1 | 2 | 1 | LRR_4 | 29 | 61 | 6.8e-16 | 57.4 | 4.4e-09 | 5.4e-06 | 25.8 |
pfu_aug1.0_149.1_65264.t1 | 3 | 1 | LRR_1 | 43 | 63 | 3.5e-09 | 35.4 | 3.9e-05 | 0.048 | 13.6 |
pfu_aug1.0_149.1_65264.t1 | 2 | 2 | LRR_4 | 65 | 104 | 6.8e-16 | 57.4 | 8.6e-11 | 1.1e-07 | 31.3 |
pfu_aug1.0_149.1_65264.t1 | 3 | 2 | LRR_1 | 66 | 82 | 3.5e-09 | 35.4 | 0.00019 | 0.24 | 11.5 |
pfu_aug1.0_149.1_65264.t1 | 2 | 2 | LRR_8 | 81 | 102 | 3.5e-11 | 42.6 | 7.8e-05 | 0.097 | 12.4 |
pfu_aug1.0_149.1_65264.t1 | 3 | 3 | LRR_1 | 87 | 103 | 3.5e-09 | 35.4 | 0.00085 | 1.1 | 9.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_149.1_65264.t1 | gi|198435195|ref|XP_002130354.1| | PREDICTED: leucine-rich repeat-containing protein 49 [Ciona intestinalis] | 1.0e-25 |
Transcript
Transcript ID | pfu_aug1.0_149.1_65264.t1 |
---|---|
Definition | - |
>pfu_aug1.0_149.1_65264.t1 atgtggcccccttgggactcttgtttaaaaaagcttttattttataccataacatttgacctagtcaccttgaccttctt caaacaatctagaataaagaaaattgagaatttggataatctagtcaaactggatgtgttggatctccatggtaaccaga tatcaaccatagagaacctgagtcatttgagtgaattacgggtgttgaatttggcaggtaaccaaattgtccacgtagat aacttagccggcatggattcattggcagagcttaaccttaggcgtaaccgcattaaaactgtgtcagttttcagataa |
Protein
Protein ID | pfu_aug1.0_149.1_65264.t1 |
---|---|
Definition | - |
>pfu_aug1.0_149.1_65264.t1 MWPPWDSCLKKLLFYTITFDLVTLTFFKQSRIKKIENLDNLVKLDVLDLHGNQISTIENLSHLSELRVLNLAGNQIVHVD NLAGMDSLAELNLRRNRIKTVSVFR |