Gene
Gene Model ID | pfu_aug1.0_15156.1_46844 |
---|---|
Locus | scaffold15156.1 : 3072 ... 12412 : - |
To GenomeBrowser | scaffold15156.1:3072..12412 |
Genes list of scaffold | scaffold15156.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_15156.1_46844.t1 | 4 | 1 | zf-NF-X1 | 18 | 24 | 2.0e-06 | 27.6 | 0.013 | 190.0 | 2.1 |
pfu_aug1.0_15156.1_46844.t1 | 4 | 2 | zf-NF-X1 | 30 | 47 | 2.0e-06 | 27.6 | 1.4e-10 | 2.0e-06 | 27.6 |
pfu_aug1.0_15156.1_46844.t1 | 4 | 3 | zf-NF-X1 | 55 | 60 | 2.0e-06 | 27.6 | 0.089 | 1300.0 | -0.6 |
pfu_aug1.0_15156.1_46844.t1 | 4 | 4 | zf-NF-X1 | 69 | 78 | 2.0e-06 | 27.6 | 0.44 | 6500.0 | -2.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_15156.1_46844.t1 | gi|221132255|ref|XP_002157347.1| | 3.0e-21 |
Transcript
Transcript ID | pfu_aug1.0_15156.1_46844.t1 |
---|---|
Definition | - |
>pfu_aug1.0_15156.1_46844.t1 atggtggtccgtgtgaaccgtgtgctgaagtcatcgtacaaaaaagatgagcatccttgcgaccttatttgtgggaagaa gttgagttgtggccttcacaaatgtgacgagccttgtcaccgtggtaactgtccaccatgtttaatggcaggttttgacg aggtgacatgtcactgtggtagtgagattatgtatcctccaataccatgtggtgccaagccgcccgagtgtaaaaaaggt gtacacgacaacactcatgtgaccatccaggtaagtgtaaaaaaccgtgtacacaacaacactcatgtgaccatccagtt cgccgggatgaaaaattccggagagctaatgccataccctcggcgtcgttgtcgtcggcggcgtcgtcgtccgtag |
Protein
Protein ID | pfu_aug1.0_15156.1_46844.t1 |
---|---|
Definition | - |
>pfu_aug1.0_15156.1_46844.t1 MVVRVNRVLKSSYKKDEHPCDLICGKKLSCGLHKCDEPCHRGNCPPCLMAGFDEVTCHCGSEIMYPPIPCGAKPPECKKG VHDNTHVTIQVSVKNRVHNNTHVTIQFAGMKNSGELMPYPRRRCRRRRRRP |