Gene
Gene Model ID | pfu_aug1.0_1562.1_22652 |
---|---|
Locus | scaffold1562.1 : 4826 ... 20017 : + |
To GenomeBrowser | scaffold1562.1:4826..20017 |
Genes list of scaffold | scaffold1562.1 |
Synonym | pfu_aug2.0_64.1_13512 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1562.1_22652.t1 | 2 | 1 | Ribosomal_L13 | 7 | 71 | 1.7e-12 | 47.5 | 2.2e-16 | 3.3e-12 | 46.5 |
pfu_aug1.0_1562.1_22652.t1 | 2 | 2 | Ribosomal_L13 | 119 | 135 | 1.7e-12 | 47.5 | 0.12 | 1800.0 | -1.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1562.1_22652.t1 | gi|76573377|gb|ABA46793.1| | 60S ribosomal protein L13A [Mytilus edulis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 3 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 2 |
maleGonad | 3 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_1562.1_22652.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1562.1_22652.t1 atgttgaagtacctgaaatacctacgtctgagatgcaatgtaaaaccaacacgtggtccattccacttcagggcacctag ccgtatcttctataaggcaatacgaggtatgctgccacacaagttaacacgagggaaggaggccctggctagattaaagg tatttgagggaatcccaccaccctacgacaaacagaagaggatggtcgtaccctcagctcttagagtcaacagactgaat ccttgcaggaaatactgtgatttgaacagacttgcacatgaagttggatggaagtaccagggtgtcatatcaaccttgga agcaaggaggaaagtgaaatcaaagagattccatgataagaagaagcaacttacgttattaagagaaaaggctaaagcaa atgttgcaaagaagacggacaagcaccagaaagtgatcgaggcatatggctacaattaa |
Protein
Protein ID | pfu_aug1.0_1562.1_22652.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1562.1_22652.t1 MLKYLKYLRLRCNVKPTRGPFHFRAPSRIFYKAIRGMLPHKLTRGKEALARLKVFEGIPPPYDKQKRMVVPSALRVNRLN PCRKYCDLNRLAHEVGWKYQGVISTLEARRKVKSKRFHDKKKQLTLLREKAKANVAKKTDKHQKVIEAYGYN |