Gene
Gene Model ID | pfu_aug1.0_16.1_07313 |
---|---|
Locus | scaffold16.1 : 626135 ... 634140 : + |
To GenomeBrowser | scaffold16.1:626135..634140 |
Genes list of scaffold | scaffold16.1 |
Synonym | pfu_aug2.0_1209.1_31521 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_16.1_07313.t1 | 1 | 1 | Ependymin | 88 | 218 | 2.0e-22 | 79.3 | 1.9e-26 | 2.7e-22 | 78.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_16.1_07313.t1 | gi|50539892|ref|NP_001002416.1| | mammalian ependymin-related protein 1 precursor [Danio rerio] | 4.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_16.1_07313.t1 |
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Definition | - |
>pfu_aug1.0_16.1_07313.t1 atgacttatacgcgcgcaacgttttatgcacgcatccacccatgtgtacgactcgttgacattgtaacatcgaccaaaat gacgaggatagcgttcgtgcttttagccattttcgcttggaccaacgcccaggccccttccccgtgcgttgcgcccacac aatttgcggcgcgggtatcacagtataatcatggaaccgacaccatcaaccgtttcatcatgcagtatgacgctagcaat gaacgttgggtgctctttgaagaaatggatgcatttacaccaggacgcagattctacgagtatcttatcctgacaagaga aaatgtagaatacaaattcgacctacgttcccacgagtgcaccaaagctcccgcccgaccctggagagcattcggaatcc ctctaaatggtacatttgagaacgagtttacacttggaggcccaggggagatgtttgttgctcaacaatggtcggacaga ataccctttagaacaaacgctcagattctcgtcgacgtcacattaatcaattgtttccccttaaaagaagtgctgatttc aaacaataatgtgacccagacaaccaccacagatttttacgacgttttggagggaaaccccaaccccaatgactttgtcc ctcccaaggaatgtttgacagccaagcaagtacaggacaaaccattcacacactggccgtag |
Protein
Protein ID | pfu_aug1.0_16.1_07313.t1 |
---|---|
Definition | - |
>pfu_aug1.0_16.1_07313.t1 MTYTRATFYARIHPCVRLVDIVTSTKMTRIAFVLLAIFAWTNAQAPSPCVAPTQFAARVSQYNHGTDTINRFIMQYDASN ERWVLFEEMDAFTPGRRFYEYLILTRENVEYKFDLRSHECTKAPARPWRAFGIPLNGTFENEFTLGGPGEMFVAQQWSDR IPFRTNAQILVDVTLINCFPLKEVLISNNNVTQTTTTDFYDVLEGNPNPNDFVPPKECLTAKQVQDKPFTHWP |