Gene
Gene Model ID | pfu_aug1.0_1614.1_22682 |
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Locus | scaffold1614.1 : 43364 ... 50565 : - |
To GenomeBrowser | scaffold1614.1:43364..50565 |
Genes list of scaffold | scaffold1614.1 |
Synonym | pfu_aug2.0_170.1_00365 |
Manual annotation
Study field | Reproduction |
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Gene name | Pifuc-estrogen receptor |
Description | BLASTN best hit to accession AB259818 (Crassostrea gigas ER) 437 bits, e-121. Only putative ligand binding domain. DNA binding domain missing. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1614.1_22682.t1 | 1 | 1 | Hormone_recep | 58 | 240 | 1.1e-27 | 96.4 | 2.0e-31 | 1.4e-27 | 96.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1614.1_22682.t1 | gi|124001517|dbj|BAF45381.1| | estrogen receptor [Crassostrea gigas] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_1614.1_22682.t1 |
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Definition | - |
>pfu_aug1.0_1614.1_22682.t1 atgtccaccaagcagcagacgacagccaagaggagtcgcgcggactcgtcagacaatactgtcaattctactagtggaag tcccaatcctccgaagaatgctcgccgatctcagactacggttattttggcggcactaaacaaggcagaacttcccatgt tggaggggttccacaatcataatcttccccccacaaaacttcacctccttaattccctcatcaaactagcagagagggaa ttagtgcacctcatcaactgggcaaaaaatgttccaggttacacagatctgtcgctgggagaccaggtccatctgatcga gtgttgttggatggaattgctcctcttaaaccgtgcattccggtccagagaacaagacggcaatcgtctggtatttgctc cggatcttatactggacaggtcaatgtgggcagttgtggggatgacagagatctttgaacaggttgcagcagtatctgaa caaatggtgcatcttaacgtacataaagacgagttcttactgctgcaagcaacggtcctcgttaatgcagaggctcgccg attggagagttatgtacagattcatcacatgcgacagtctttattggacgctattgtagatactgcacaaaaatatcatc cagacaatctcagacatgtgccgtcccttcttctattattaactcatatacgacaagcaggagagcgtgccatcgcttac tttcaaaaactcaaatatgagggtgctgtgaacttctgtgaccttttaaaggagatgctagatgcacaagattttatgga gagagtttccggaaatcaggtgcgacgtaatgaagactgtgacagtggccgtgtatcacagcctgggctcggcacgtaa |
Protein
Protein ID | pfu_aug1.0_1614.1_22682.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1614.1_22682.t1 MSTKQQTTAKRSRADSSDNTVNSTSGSPNPPKNARRSQTTVILAALNKAELPMLEGFHNHNLPPTKLHLLNSLIKLAERE LVHLINWAKNVPGYTDLSLGDQVHLIECCWMELLLLNRAFRSREQDGNRLVFAPDLILDRSMWAVVGMTEIFEQVAAVSE QMVHLNVHKDEFLLLQATVLVNAEARRLESYVQIHHMRQSLLDAIVDTAQKYHPDNLRHVPSLLLLLTHIRQAGERAIAY FQKLKYEGAVNFCDLLKEMLDAQDFMERVSGNQVRRNEDCDSGRVSQPGLGT |