Gene
Gene Model ID | pfu_aug1.0_16617.1_18364 |
---|---|
Locus | scaffold16617.1 : 11706 ... 14989 : + |
To GenomeBrowser | scaffold16617.1:11706..14989 |
Genes list of scaffold | scaffold16617.1 |
Synonym | NA |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | cytidine deaminase |
Description | Best hit to EU101721 (abalone). 164 bits, 8e-39 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_16617.1_18364.t1 | 2 | 1 | dCMP_cyt_deam_2 | 61 | 128 | 9.1e-09 | 35.3 | 3.7e-12 | 2.8e-08 | 33.8 |
pfu_aug1.0_16617.1_18364.t1 | 1 | 1 | dCMP_cyt_deam_1 | 63 | 158 | 6.8e-18 | 64.2 | 1.3e-21 | 9.4e-18 | 63.7 |
pfu_aug1.0_16617.1_18364.t1 | 2 | 2 | dCMP_cyt_deam_2 | 179 | 191 | 9.1e-09 | 35.3 | 0.26 | 2000.0 | -1.3 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_16617.1_18364.t1 |
---|---|
Definition | - |
>pfu_aug1.0_16617.1_18364.t1 atgtctaaccggaatatcgggcgcatgaaatatcgggaaataacgtctgaagttaaaaaggtattactcgacagatcttc catnacctctcaccgataccctggaggacaagtgcatctttctgacatcttccttttaggacacttaacggcaattcgaa tggagctgaactcattagacaagcgtatccaggacttggtgaaagcagcgatagaggtcaaagccaacgcctattgtcct tacagcaactttcgtgttggtgcttcactgctgacagaaaacgatgttattataacaggctgtaacgtagagaatgcatc ttatgggctatctgtttgtgcagaacgagtagctattatgtctgctgtgtcacaaggtcacaccaagttcaaggctgcgg cagtttcatgtgacattaaaggagacttcaaagctccgtgtggtgcttgtagacagttttatgccgagttcaacttggac cttgacctttacctagtgaagccagacaatacagtgaaatgtgtcaaaatcagagacgttttaccgatggcgtttacacc gcagtcactcgaagaagacagaatctaa |
Protein
Protein ID | pfu_aug1.0_16617.1_18364.t1 |
---|---|
Definition | - |
>pfu_aug1.0_16617.1_18364.t1 MSNRNIGRMKYREITSEVKKVLLDRSSXTSHRYPGGQVHLSDIFLLGHLTAIRMELNSLDKRIQDLVKAAIEVKANAYCP YSNFRVGASLLTENDVIITGCNVENASYGLSVCAERVAIMSAVSQGHTKFKAAAVSCDIKGDFKAPCGACRQFYAEFNLD LDLYLVKPDNTVKCVKIRDVLPMAFTPQSLEEDRI |