Gene
Gene Model ID | pfu_aug1.0_16816.1_54344 |
---|---|
Locus | scaffold16816.1 : 2662 ... 11917 : - |
To GenomeBrowser | scaffold16816.1:2662..11917 |
Genes list of scaffold | scaffold16816.1 |
Synonym | pfu_aug2.0_1770.1_01821 |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | Pax-2/5/8 |
Description | BLAST best hits to NCBI NM_001032480.1. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_16816.1_54344.t1 | 1 | 1 | PAX | 1 | 52 | 5.5e-18 | 64.8 | 5.6e-22 | 8.3e-18 | 64.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_16816.1_54344.t1 | gi|334313412|ref|XP_001377012.2| | 2.0e-15 |
Transcript
Transcript ID | pfu_aug1.0_16816.1_54344.t1 |
---|---|
Definition | - |
>pfu_aug1.0_16816.1_54344.t1 caagttgctaccccgtatgtcattaagaggattatcgacataaagcgtcaaaatccagccagcttcgcctgggaaatccg agaccaattgattgccacaggaatttgcgatgaacacactattccatctgtaagctcgatcaacagaattctgagaaatg ccgcctctttttctgaaacatacgacttgcccactgatccagtacctttgagtcacgtgacacaagtgcactctactttt ccaagacttccggtgatgatgacgtcacttcctcattcttcaccaattactgatcgttttccatcgtctatccccgggtt atcctatcccaaaatggttgaacagctcgaacctgaagatgaaataaaaacatcgttggaaaattcgggcgaaaagaaag tgtgtgactgtctcgtgagtttactggaaaatcagctgctgtgtgatgactttcagaaagacacctttaaagatattaaa gatgctttacaggtgtatgacttctttctgtattacgagcactggttaacaaatggtggagaaaattttcggaagattaa aacatgttaa |
Protein
Protein ID | pfu_aug1.0_16816.1_54344.t1 |
---|---|
Definition | - |
>pfu_aug1.0_16816.1_54344.t1 QVATPYVIKRIIDIKRQNPASFAWEIRDQLIATGICDEHTIPSVSSINRILRNAASFSETYDLPTDPVPLSHVTQVHSTF PRLPVMMTSLPHSSPITDRFPSSIPGLSYPKMVEQLEPEDEIKTSLENSGEKKVCDCLVSLLENQLLCDDFQKDTFKDIK DALQVYDFFLYYEHWLTNGGENFRKIKTC |