Gene
Gene Model ID | pfu_aug1.0_234.1_29151 |
---|---|
Locus | scaffold234.1 : 72886 ... 81027 : + |
To GenomeBrowser | scaffold234.1:72886..81027 |
Genes list of scaffold | scaffold234.1 |
Synonym | NA |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | PFMG9 like |
Description | reciprocal BLASTN best hit to DQ116436.1 Pinctada fucata mantle protein 9 (MG9) mRNA mRNA |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_234.1_29151.t1 | 2 | 1 | Kazal_1 | 3 | 28 | 7.2e-07 | 29.1 | 0.0028 | 21.0 | 5.2 |
pfu_aug1.0_234.1_29151.t1 | 2 | 1 | Kazal_2 | 3 | 28 | 1.3e-06 | 28.2 | 0.00083 | 6.2 | 6.8 |
pfu_aug1.0_234.1_29151.t1 | 2 | 2 | Kazal_1 | 33 | 67 | 7.2e-07 | 29.1 | 1.6e-10 | 1.2e-06 | 28.4 |
pfu_aug1.0_234.1_29151.t1 | 2 | 2 | Kazal_2 | 33 | 67 | 1.3e-06 | 28.2 | 2.9e-09 | 2.2e-05 | 24.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_234.1_29151.t1 | gi|71063300|gb|AAZ22318.1| | mantle protein 9 [Pinctada fucata] | 1.0e-23 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
mantleEdge | 2 |
mantlePallium | 2 |
Transcript
Transcript ID | pfu_aug1.0_234.1_29151.t1 |
---|---|
Definition | - |
>pfu_aug1.0_234.1_29151.t1 atgtgcaaccggtgccgacttaggacggccatctgccacggaaatagcagaagtggagtcgaaatagcatatcctggaag atgtgaggattgcatctgtccacgaaatattgccccagtttgcggaataaatggacggacgtatttgaatgattgtatta ggagatgcagtggaataccaaaggcttatgatggtccgtgtataggaggcgggagagataagcttctcagtcagggatat gttcgtaaccgactaacatcgtcattgaggaagttctacggtcgatatggggaactcgtcatacactacgatgtcctact ctccagaatggtggatgatattctgttatag |
Protein
Protein ID | pfu_aug1.0_234.1_29151.t1 |
---|---|
Definition | - |
>pfu_aug1.0_234.1_29151.t1 MCNRCRLRTAICHGNSRSGVEIAYPGRCEDCICPRNIAPVCGINGRTYLNDCIRRCSGIPKAYDGPCIGGGRDKLLSQGY VRNRLTSSLRKFYGRYGELVIHYDVLLSRMVDDILL |