Gene
Gene Model ID | pfu_aug1.0_24692.1_26195 |
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Locus | scaffold24692.1 : 16856 ... 20858 : + |
To GenomeBrowser | scaffold24692.1:16856..20858 |
Genes list of scaffold | scaffold24692.1 |
Synonym | pfu_aug2.0_438.1_27394 |
Manual annotation
Study field | Transcription Factors |
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Gene name | Pfu-HES-like2 |
Description | Best hit to EAW78058 hairy and enhancer of split 1, (Drosophila) [Homo sapiens] with 3e-17 by a BLASTP search against NCBI Homo sapiens nr database. The predicted protein has a Hairy_orange domain, but does not have a WRPW/YRPW motif. We could not retrieve full bHLH domain, and therefore this gene is not included in the bHLH annotation paper. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_24692.1_26195.t1 | 1 | 1 | Hairy_orange | 30 | 65 | 5.9e-10 | 38.7 | 1.5e-13 | 1.1e-09 | 37.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_24692.1_26195.t1 | gi|118343727|ref|NP_001071684.1| | transcription factor protein [Ciona intestinalis] | 2.0e-12 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
Dshape | 1 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_24692.1_26195.t1 |
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Definition | - |
>pfu_aug1.0_24692.1_26195.t1 atggaaaaggccgacatcttggaaatgaccgtacgatatctacgaagagttcagcagcaaagatgttcaggccgaccatc tacctccagtaagtacagattgggcttcaatgaatgtatctccgagatcggcaagtttctgaagacatcagacaacgttg acccggatgtacatgccaaagttctcgatcatcttgtcaaccaatcattcgagaaagattcgaccaatgaaaccgaagat gacattttaaaaagtccttttgatgtgaacaataataacggaattaaaacttcacctctcaaaaacgatcgaatgtatga acgaaattgtgaaagtcacggacttagagtaactgctggtggaaatccgactgttgtatcgccgcaagccacatcaacca atgaaaatgcacaaaatttgatttgcaccaatcaaacgcagataccgtatcaaaagaagaaggaattgaatgtccaacca gacaaggctgcaggagaagcagcgaaacgccatgacaagattgcagtaactgacaacatgatcaacaaatttaccatcat tactccaaaagcatggaagtag |
Protein
Protein ID | pfu_aug1.0_24692.1_26195.t1 |
---|---|
Definition | - |
>pfu_aug1.0_24692.1_26195.t1 MEKADILEMTVRYLRRVQQQRCSGRPSTSSKYRLGFNECISEIGKFLKTSDNVDPDVHAKVLDHLVNQSFEKDSTNETED DILKSPFDVNNNNGIKTSPLKNDRMYERNCESHGLRVTAGGNPTVVSPQATSTNENAQNLICTNQTQIPYQKKKELNVQP DKAAGEAAKRHDKIAVTDNMINKFTIITPKAWK |