Gene
Gene Model ID | pfu_aug1.0_25206.1_11675 |
---|---|
Locus | scaffold25206.1 : 1716 ... 13963 : + |
To GenomeBrowser | scaffold25206.1:1716..13963 |
Genes list of scaffold | scaffold25206.1 |
Synonym | pfu_aug2.0_6760.1_02875 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_25206.1_11675.t1 | 1 | 1 | RRM_1 | 198 | 262 | 1.4e-14 | 53.4 | 1.4e-17 | 2.5e-14 | 52.6 |
pfu_aug1.0_25206.1_11675.t1 | 1 | 1 | RRM_6 | 198 | 263 | 1.6e-11 | 44.0 | 1.5e-14 | 2.8e-11 | 43.2 |
pfu_aug1.0_25206.1_11675.t1 | 1 | 1 | RRM_5 | 212 | 266 | 1.2e-10 | 41.0 | 1.3e-13 | 2.4e-10 | 40.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_25206.1_11675.t1 | gi|291243067|ref|XP_002741428.1| | PREDICTED: pre-mRNA-splicing factor RBM22-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_25206.1_11675.t1 |
---|---|
Definition | - |
>pfu_aug1.0_25206.1_11675.t1 atgaaagaaaagtatggcaaggagtgcaagatctgtgctcgtcctttcacagtctttagatggaatcccggagcacgaat gaggttcaagaaaacagaggtctgtcaaacgtgtagtaagctgaaaaacgtgtgccagacttgtttgctagatctggaat atggtttacctgtacaggtcagggatcatgcattaaaagttcaagacacaatgccaaagtctgacgtcaacaaggaatac tacacacagaatatggaaagagaaataggcaacagtgacggtataagtgccgtgggagcactaggtaaagcccaggcccc cagtgatatgctcttaaagttagctaggaccacaccctactacaagagaaataggcctcacatctgctcattctgggtca agggagagtgtaagagaggagaggagtgtccatacagacatgacaagccgacagatccggatgatccactggcggaccag aacataaaggatcgattctacggtacagatgatcctgtggccgagaagttactacggcgatacagcgatctacccaaact ggagataccagaggataaaactataactactctttacgtggggaatctcggtgaaaaaattggtgaaacagaattaaagg atcatttctaccagtttggtgagatacgttccataaacgtggtcagcaaacagcagtgtgcgtttgttcagtttacaaca cgatcatcagcggagcaagctgcggaaaagtctttcaacaagctgatcattggtgggaggagactgaatatcaagtgggg cagatctcaaggtcagcagatggcagtaaagagggacggggaggaggacgaggccaagttagagcccgttcccggactcc caggaggtaagattcaatcctttatagtaattcaggaagtgtga |
Protein
Protein ID | pfu_aug1.0_25206.1_11675.t1 |
---|---|
Definition | - |
>pfu_aug1.0_25206.1_11675.t1 MKEKYGKECKICARPFTVFRWNPGARMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPVQVRDHALKVQDTMPKSDVNKEY YTQNMEREIGNSDGISAVGALGKAQAPSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHDKPTDPDDPLADQ NIKDRFYGTDDPVAEKLLRRYSDLPKLEIPEDKTITTLYVGNLGEKIGETELKDHFYQFGEIRSINVVSKQQCAFVQFTT RSSAEQAAEKSFNKLIIGGRRLNIKWGRSQGQQMAVKRDGEEDEAKLEPVPGLPGGKIQSFIVIQEV |