Gene
Gene Model ID | pfu_aug1.0_2596.1_66390 |
---|---|
Locus | scaffold2596.1 : 49652 ... 58875 : - |
To GenomeBrowser | scaffold2596.1:49652..58875 |
Genes list of scaffold | scaffold2596.1 |
Synonym | pfu_aug2.0_529.1_30868 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_2596.1_66390.t1 | 1 | 1 | Ribosomal_L11_N | 12 | 69 | 2.9e-15 | 55.4 | 8.8e-19 | 4.3e-15 | 54.8 |
pfu_aug1.0_2596.1_66390.t1 | 1 | 1 | Ribosomal_L11 | 74 | 134 | 3.2e-07 | 30.3 | 1.2e-10 | 5.7e-07 | 29.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_2596.1_66390.t1 | gi|22758902|gb|AAN05610.1| | ribosomal protein L12 [Argopecten irradians] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 8 |
egg-4cell | 2 |
8-16cell | 2 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 4 |
maleGonad | 1 |
mantle | 6 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_2596.1_66390.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2596.1_66390.t1 atgcctcctaaattcgatcctacagccataactatcgtttacgtgaagtcagtcggaggagaagtgccagctacctcttc attggccccaaagatcggtccacttggtctgtcaccaaagaaagtaggagatgatatctcaaaagccacagtagactgga agggactaaaaataacatgtaaattggtggtacagaatcgtcaggccaaggtagaagttgtaccaagtgcctcatcactg gttattaaggctctaaaggaacctcccagggacagaaagaaggtcaagcatgtgaaacacactggaaacattagcttcga cgagatcctcaacattgcaagacagatgagaccaagaagtatggcaagaaaattagaaggaacagtcaaagaaatattag agattgcttatgacaagaggaagatccctattttcaagatcaagttcacattggaaatggtcagaatcttttatattcag cctagaggctgctgttttgattggatcttgaccaaacttcatacagtgattgcttatgacgagacttgtaggaggaaacc tattgactttcaaggtcaaatgtcaatatcagagattggaaatggtcaacatccttgtatacagcctagagggtgcagtt ttgattggatcttcatcaaacttcatacaccaattgcttatgagaagaataagaaccctattgattttcaaggtcaaagg tcacagattggaaatggtcaaaatctttgtatacagtcttga |
Protein
Protein ID | pfu_aug1.0_2596.1_66390.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2596.1_66390.t1 MPPKFDPTAITIVYVKSVGGEVPATSSLAPKIGPLGLSPKKVGDDISKATVDWKGLKITCKLVVQNRQAKVEVVPSASSL VIKALKEPPRDRKKVKHVKHTGNISFDEILNIARQMRPRSMARKLEGTVKEILEIAYDKRKIPIFKIKFTLEMVRIFYIQ PRGCCFDWILTKLHTVIAYDETCRRKPIDFQGQMSISEIGNGQHPCIQPRGCSFDWIFIKLHTPIAYEKNKNPIDFQGQR SQIGNGQNLCIQS |