Gene
Gene Model ID | pfu_aug1.0_2978.1_23137 |
---|---|
Locus | scaffold2978.1 : 29346 ... 44043 : + |
To GenomeBrowser | scaffold2978.1:29346..44043 |
Genes list of scaffold | scaffold2978.1 |
Synonym | pfu_aug2.0_476.1_20816 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_2978.1_23137.t1 | 2 | 1 | Neur_chan_LBD | 31 | 239 | 0.0 | 290.4 | 0.0 | 0.0 | 214.5 |
pfu_aug1.0_2978.1_23137.t1 | 2 | 1 | Neur_chan_memb | 246 | 427 | 0.0 | 319.9 | 1.26117e-44 | 9.3e-41 | 140.2 |
pfu_aug1.0_2978.1_23137.t1 | 2 | 2 | Neur_chan_LBD | 430 | 550 | 0.0 | 290.4 | 6.5e-26 | 4.8e-22 | 78.1 |
pfu_aug1.0_2978.1_23137.t1 | 2 | 2 | Neur_chan_memb | 557 | 789 | 0.0 | 319.9 | 0.0 | 0.0 | 183.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_2978.1_23137.t1 | gi|325296905|ref|NP_001191486.1| | non-alpha nicotinic acetylcholine receptor subunit precursor [Aplysia californica] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 4 |
>Adult tissues | |
adductorMuscle | 1 |
Transcript
Transcript ID | pfu_aug1.0_2978.1_23137.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2978.1_23137.t1 atgatttatatttcatccaaagttataattctaatgtttatgacgacatcctcggcagtatttcataaaggattggggag tgaggatgaagtgagacttgtccgagatttatttgagaggggttataacccattaatccgtccagtcaagaatatcagtg aatctatagaagtacaattcaatttggctctaagtcaacttattagcgtggatgagaaaaatcaagtaatgaagacaaat gtgtggctacagatgtattggaacgattatcagctacagtggaatcctaaggattatggcggtattagcacaatccgtat aagccacaataaagcttggagaccagatatagttctgtttaacaacgctgacgggacttacgaggtgagttacgagtcta acgttgttataggctctagttcccttatctattgggtacctcccgccatttacaaatcctcatgcaccattgatgtcaag tactttccatttgatgagcaaatttgtgagatgcattttggatcatggacgttcgacatcaaccagcttcacttttcctt ctacgaaaatatgagggctctggaccttacggattacttgaagagtggaacatgggatattattgaattccctgtcgata tcgtcaatcatacagacttgtctaaaaacgaaacaaaatccatttacatagccaaattcaagttgagaaggaaaaccctg ttttacctcgtaaacctgatcattccttgtgtgttgatttcactggttagtgtgtgcgtgttcgcgttaccagctgatgc aggggagaagatcacgctttgtatttcaattttactggcccttgttgtgtttttgttacttatttcaaggtcattacctc ctgcccttacaattcctctcatttcaaagtttctgttgtttacatttatcatcaacataatcgccatcggatcaactgtt tttgtgataaatcagaacttccggacgccgagaactcatgatatgcctgtttggatacgcacaatctttctcaaacattt acccacaatactgctgatgcgccgtccaaatcatatcgagaggtatcacgcaacagataaaaagaaggaaaaagaagaaa gcgccgaaaatgaaaataaaagcgaaatgaaccaactttgtaagaacctgttagaagagcaccttaaaaattgtgagatt cataattctacaaaggatttatcaagtgcagctgtcttacagactgagtctttagaccctacatatcaaagggcagtaaa tgctataagcgctgatggaaattacgaggtgacatacgagcccaacgttgtcttggtgatggacaagaattccgattaca atatttatcagattcctcccgcaatctttaaaagctcttgtgaaatcgatgtcaagtattttcccttcgatgaacaagtg tgtgaaatgaagtttggatcatggaccttccaggcagaccaactcaatttcacctatacaaagttcagaggacttgattt gacagattacctcaaaagtggaacatgggacctggtggattgtcccgcaaggatagaaatttgtgccgacgaaaatacga aacaagctaaagctctttacatcgcacagtttcgtattcgacgaaagacgcttttttacacagtaaacttgttgattcct tgtatgctaatttctttcgtcagtataagtgtttttctgctcccacccgattcctgtgaaaaaatcactttgattatttc cattctccttgccctggtggtgtttttgctccttatctctaaaatgttgccaccgtctttgacgattccccttatagcaa agtatttgatgtttaattttctgatgaacataattgccattgggtccacagtctttgtcataaacaggaactataggaca gcaaggacccatcgtatgccaaaatggacaagggtagttttcctgaactatttgccacggatattattcatgaagcgccc aaatcacgatgacagatggcaaaaatcaaatatgtccgacataactgcttctaaatcttcattggacgcacatagcaggc ttgattttgatatcaacgatgtaagattggacaaagaaagagatactaaacactccaaaagacccaaaaggaaaacaagt gatccggaaaatgatattacctccaactttcgtttatcaccggaaatggccgaagctaacgaagcgattgctttcatgag gcgccatctagagtgggaggataaatatgaaacggtacaagatgattggaaatacgttgccttggtgatagaccgtcttt tactgtatatatttctattagtgactgtttgtggtactttggccatcctatttcagtctcctttcatcttaatgaatgtg gatcaggatacacagatagaacatttgaagcttaagtacaatcttagcataactggcaaaccggcaggaccaattccgat acgaatagctccttgttaa |
Protein
Protein ID | pfu_aug1.0_2978.1_23137.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2978.1_23137.t1 MIYISSKVIILMFMTTSSAVFHKGLGSEDEVRLVRDLFERGYNPLIRPVKNISESIEVQFNLALSQLISVDEKNQVMKTN VWLQMYWNDYQLQWNPKDYGGISTIRISHNKAWRPDIVLFNNADGTYEVSYESNVVIGSSSLIYWVPPAIYKSSCTIDVK YFPFDEQICEMHFGSWTFDINQLHFSFYENMRALDLTDYLKSGTWDIIEFPVDIVNHTDLSKNETKSIYIAKFKLRRKTL FYLVNLIIPCVLISLVSVCVFALPADAGEKITLCISILLALVVFLLLISRSLPPALTIPLISKFLLFTFIINIIAIGSTV FVINQNFRTPRTHDMPVWIRTIFLKHLPTILLMRRPNHIERYHATDKKKEKEESAENENKSEMNQLCKNLLEEHLKNCEI HNSTKDLSSAAVLQTESLDPTYQRAVNAISADGNYEVTYEPNVVLVMDKNSDYNIYQIPPAIFKSSCEIDVKYFPFDEQV CEMKFGSWTFQADQLNFTYTKFRGLDLTDYLKSGTWDLVDCPARIEICADENTKQAKALYIAQFRIRRKTLFYTVNLLIP CMLISFVSISVFLLPPDSCEKITLIISILLALVVFLLLISKMLPPSLTIPLIAKYLMFNFLMNIIAIGSTVFVINRNYRT ARTHRMPKWTRVVFLNYLPRILFMKRPNHDDRWQKSNMSDITASKSSLDAHSRLDFDINDVRLDKERDTKHSKRPKRKTS DPENDITSNFRLSPEMAEANEAIAFMRRHLEWEDKYETVQDDWKYVALVIDRLLLYIFLLVTVCGTLAILFQSPFILMNV DQDTQIEHLKLKYNLSITGKPAGPIPIRIAPC |