Gene
Gene Model ID | pfu_aug1.0_308.1_29187 |
---|---|
Locus | scaffold308.1 : 52268 ... 63935 : - |
To GenomeBrowser | scaffold308.1:52268..63935 |
Genes list of scaffold | scaffold308.1 |
Synonym | pfu_aug2.0_1666.1_21732 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_308.1_29187.t1 | 1 | 1 | zf-HIT | 4 | 32 | 7.8e-09 | 35.0 | 2.1e-12 | 7.8e-09 | 35.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_308.1_29187.t1 | gi|327276661|ref|XP_003223086.1| | PREDICTED: box C/D snoRNA protein 1 [Anolis carolinensis] | 6.0e-38 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
egg-Dshape | 1 |
>Adult tissues | |
adductorMuscle | 1 |
maleGonad | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_308.1_29187.t1 |
---|---|
Definition | - |
>pfu_aug1.0_308.1_29187.t1 atgtcaaagaggaagtgtgaagtatgtgatgaagtaattgccaaatatacatgtccacgctgccaaaaaaggacttgttc attatcatgtgtgaagaaacataaaggagaaaccaagtgtgatggaattcgagataaaactgcctatttaccaatgaagg aattcacagatatagctcttttgaatgattacagatttctagaagaagcaggaagaatagcagacaattctaaaagagat cctaaaaaacgcagaattacacatgctggatatttgaatcaggtgagttatggtgacattttgtggcatgtagaacttat ctttccggaggctgaagccaagtacacagaatcaagggtaaatgaaaatacaacactacaagacatattgaggggatata tccatcctacagagtcagacccggttaaacgacagaagctgaaattgtactgtgtcaatggatctgtggattataaagta ttcctcaggaaggaaagatccccagccaatgatgttaggcgcatcagaatggtatcgacgaaagataaaacgtatcgagt ttcaaaatttaaagtgatttgtattgtccaacgttccattcttatccgcaccttttag |
Protein
Protein ID | pfu_aug1.0_308.1_29187.t1 |
---|---|
Definition | - |
>pfu_aug1.0_308.1_29187.t1 MSKRKCEVCDEVIAKYTCPRCQKRTCSLSCVKKHKGETKCDGIRDKTAYLPMKEFTDIALLNDYRFLEEAGRIADNSKRD PKKRRITHAGYLNQVSYGDILWHVELIFPEAEAKYTESRVNENTTLQDILRGYIHPTESDPVKRQKLKLYCVNGSVDYKV FLRKERSPANDVRRIRMVSTKDKTYRVSKFKVICIVQRSILIRTF |