Gene
Gene Model ID | pfu_aug1.0_308.1_29190 |
---|---|
Locus | scaffold308.1 : 106719 ... 114445 : - |
To GenomeBrowser | scaffold308.1:106719..114445 |
Genes list of scaffold | scaffold308.1 |
Synonym | pfu_aug2.0_1666.1_21730 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_308.1_29190.t1 | 1 | 1 | Metallophos | 46 | 175 | 2.9e-36 | 124.7 | 2.29999e-40 | 3.4e-36 | 124.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_308.1_29190.t1 | gi|260794991|ref|XP_002592490.1| | hypothetical protein BRAFLDRAFT_113834 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 3 |
egg-4cell | 2 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_308.1_29190.t1 |
---|---|
Definition | - |
>pfu_aug1.0_308.1_29190.t1 atgaaagcggacgttgatagatggattgaaattgccaaagagtgcaagtacttacctgaaaatgacttgaagaaactatg tgatatggtatgtgagcttttgttggaagaatccaatgtccagccagtgtccacaccggtcactgtgtgtggagatatcc atggacagttttacgacttgatggaacttttccgtactggtggccaatgtccagacacaaattatattttcatgggagat tttgttgacagaggctattatagtttagagacattcaccctgttactcacactgaaagcaaggtggccagacagaataat attgttacggggaaatcatgaaagtagacagattacacagatatatggattttatgatgaatgtcagacaaagtacggga atgccaatgcctggcgctgctgtaccaaagtgtttgatttactcacagtagctgctattatagatgagtgtgttctatgt gtccatggtggtttatccccagatataaagacgatagatcagattcgtaccatagaaaggaaccaagaaatacctcacaa aggagccttctgtgattttcatgagttatag |
Protein
Protein ID | pfu_aug1.0_308.1_29190.t1 |
---|---|
Definition | - |
>pfu_aug1.0_308.1_29190.t1 MKADVDRWIEIAKECKYLPENDLKKLCDMVCELLLEESNVQPVSTPVTVCGDIHGQFYDLMELFRTGGQCPDTNYIFMGD FVDRGYYSLETFTLLLTLKARWPDRIILLRGNHESRQITQIYGFYDECQTKYGNANAWRCCTKVFDLLTVAAIIDECVLC VHGGLSPDIKTIDQIRTIERNQEIPHKGAFCDFHEL |