Gene
Gene Model ID | pfu_aug1.0_3094.1_30340 |
---|---|
Locus | scaffold3094.1 : 62485 ... 66385 : - |
To GenomeBrowser | scaffold3094.1:62485..66385 |
Genes list of scaffold | scaffold3094.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_3094.1_30340.t1 | 2 | 1 | Sec20 | 39 | 43 | 2.7e-23 | 81.4 | 0.85 | 1300.0 | -0.9 |
pfu_aug1.0_3094.1_30340.t1 | 2 | 2 | Sec20 | 134 | 224 | 2.7e-23 | 81.4 | 1.8e-26 | 2.7e-23 | 81.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_3094.1_30340.t1 | gi|291223881|ref|XP_002731936.1| | PREDICTED: vesicle transport protein SEC20-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
>Adult tissues | |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_3094.1_30340.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3094.1_30340.t1 atggcaacagaggatattcaagtacgactttgcctccaagaaatagtgaaacttgatttagaaatcaaagcattgatcca ggacatccaagagtgtgcgactacatcagagattttggaggacattaatgctgatgcccaggctaaagtgtccaagctcc gacataaaattcaggatttagaacagttaggtagggagcaggagaaaggcagcgtacgtcaaatcatacagaaggatgta gacagtcacagacagcgtctcacaaacacgatatctactctacggcaaactaatcttgccacacaattcgccattgataa atcagagaaagagcaattactaaatggaggatcatcggtcaggcagagaagattgcagacaaaggagtctatatccaaaa cggcaacagatattactcaaagcctcatgggattgaatcgtaagctagcggaacaggtggttcagagtgaagataccaaa gctactcttatgagatcatcagatacaatcaccacaacacacgatgaactcagaaacatgactggtcatattgctaactc aaaaaaacttttgtcaaagtatggacgcagacaaattactgataaacttcttatatttttggctcttgtatttttctttg cctctgttttgtatattgttaagaaaagggtatggtga |
Protein
Protein ID | pfu_aug1.0_3094.1_30340.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3094.1_30340.t1 MATEDIQVRLCLQEIVKLDLEIKALIQDIQECATTSEILEDINADAQAKVSKLRHKIQDLEQLGREQEKGSVRQIIQKDV DSHRQRLTNTISTLRQTNLATQFAIDKSEKEQLLNGGSSVRQRRLQTKESISKTATDITQSLMGLNRKLAEQVVQSEDTK ATLMRSSDTITTTHDELRNMTGHIANSKKLLSKYGRRQITDKLLIFLALVFFFASVLYIVKKRVW |