Gene
Gene Model ID | pfu_aug1.0_3120.1_51891 |
---|---|
Locus | scaffold3120.1 : 82226 ... 86469 : + |
To GenomeBrowser | scaffold3120.1:82226..86469 |
Genes list of scaffold | scaffold3120.1 |
Synonym | pfu_aug2.0_35.1_16759 |
Manual annotation
Study field | other |
---|---|
Gene name | actin |
Description | BLASTP best hit to NCBI Accession ACD99707 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_3120.1_51891.t1 | 1 | 1 | Actin | 4 | 376 | 0.0 | 535.6 | 0.0 | 0.0 | 535.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_3120.1_51891.t1 | gi|341579620|gb|AEK81538.1| | beta-actin [Meretrix meretrix] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 5 |
egg-4cell | 3 |
8-16cell | 2 |
egg-Dshape | 2 |
trochophore | 2 |
>Adult tissues | |
Dshape | 1 |
mantle | 3 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_3120.1_51891.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3120.1_51891.t1 atggcagacgaagacgttgcagctttagttattgacaatggatcgggtatgtgcaaggctgggttcgcaggagacgatgc ccctcgcgccgtcttcccctccatcgtcggcagacccaggcatcagggtgtgatggttggtatgggacagaaggacagct atgtaggagacgaggcccagagtaagagaggtatcctcaccctcaaataccccattgaacacggcattgtcacaaactgg gacgatatggagaagatttggcatcataccttctacaatgaactccgtgtggcccccgaggaacaccctgttctcctgac tgaggcgccactcaacccaaaggcaaacagagaaaagatgacacagatcatgtttgaaaccttcaactctcctgccatgt acgtagctatccaggccgtattgtcactgtacgcttccggtcgtactacaggtatcgtactggactctggggatggggta tcacacacagtacctatctacgagggatacgccctcccccacgccatcatgaggttagatcttgctggacgtgacctcac agattaccttatgaagatcctaacagagcgtggctactcattcaccaccacagctgagagagaaatcgtcagagacatta aagaaaaattgaattatgttgccttagactttgaacaagaaatgcaaacggctgcatcatcatcatctctagagaagagt tacgaacttcccgacggtcaggtcatcactattggtaacgaaaggttcagggcccccgaggccatgttccagccatcttt cctcggtatggaatcttcgggtatacatgaaacaacatacaacagtataatgaaatgtgacgtagacattcgtaaagact tgtacgcaaataccgttttatctggtggttctaccatgtacccaggtattgctgaccgtatgcagaaagaaatcacagct cttgctccatcaacaatgaaaatcaagatcatagctccaccagagaggaaatactcggtgtggattggtggatctatcct cgcttctctctccaccttccagcagatgtggatcagcaaacaggagtacgacgagtccggcccatcaatcgtccacagga agtgcttctag |
Protein
Protein ID | pfu_aug1.0_3120.1_51891.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3120.1_51891.t1 MADEDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV SHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLNYVALDFEQEMQTAASSSSLEKS YELPDGQVITIGNERFRAPEAMFQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITA LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |