Gene
Gene Model ID | pfu_aug1.0_328.1_36498 |
---|---|
Locus | scaffold328.1 : 73956 ... 81237 : + |
To GenomeBrowser | scaffold328.1:73956..81237 |
Genes list of scaffold | scaffold328.1 |
Synonym | pfu_aug2.0_30.1_00079 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_328.1_36498.t1 | 1 | 1 | NAC | 37 | 93 | 1.4e-23 | 82.1 | 1.5e-27 | 2.3e-23 | 81.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_328.1_36498.t1 | gi|260818117|ref|XP_002603931.1| | hypothetical protein BRAFLDRAFT_131258 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
egg-4cell | 2 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_328.1_36498.t1 |
---|---|
Definition | - |
>pfu_aug1.0_328.1_36498.t1 atgatgtatcgtaatacgaatcgtatcgtgagtaaatatcgtgatatgtatcgtatcggaaccgcaagaaggaagaagaa ggtagtccatcgtacggccacaacagacgataaaaagttacaaagctcactcaaaaagttgtcggtcagcaatattcctg gaatagaggaggtaaatatgattaaagatgatggtactgtgatccacttcaataatccaaaagttcaggcatctttagca gccaatacgtttgcaatcactggacaagcagaaaacaaacagatagcagaaatgctgcctggaatcctgaaccagcttgg tgctgaaagcttcagtagcttaaagaaactagcatccacagtagctgcatcaggtgacaacaaaccgcccacagatgata ttgatgatgatgatgatggagtcccagaattggtagaaaattttgatgaaacatcaaaaggagaatag |
Protein
Protein ID | pfu_aug1.0_328.1_36498.t1 |
---|---|
Definition | - |
>pfu_aug1.0_328.1_36498.t1 MMYRNTNRIVSKYRDMYRIGTARRKKKVVHRTATTDDKKLQSSLKKLSVSNIPGIEEVNMIKDDGTVIHFNNPKVQASLA ANTFAITGQAENKQIAEMLPGILNQLGAESFSSLKKLASTVAASGDNKPPTDDIDDDDDGVPELVENFDETSKGE |