Gene
Gene Model ID | pfu_aug1.0_374.1_29221 |
---|---|
Locus | scaffold374.1 : 62166 ... 77635 : - |
To GenomeBrowser | scaffold374.1:62166..77635 |
Genes list of scaffold | scaffold374.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_374.1_29221.t1 | 2 | 1 | Claudin_2 | 23 | 42 | 5.0e-07 | 29.5 | 0.086 | 420.0 | 0.5 |
pfu_aug1.0_374.1_29221.t1 | 1 | 1 | L_HGMIC_fpl | 25 | 137 | 2.0e-25 | 89.8 | 5.2e-29 | 2.6e-25 | 89.4 |
pfu_aug1.0_374.1_29221.t1 | 2 | 2 | Claudin_2 | 38 | 137 | 5.0e-07 | 29.5 | 1.4e-10 | 6.7e-07 | 29.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_374.1_29221.t1 | gi|260804783|ref|XP_002597267.1| | hypothetical protein BRAFLDRAFT_260889 [Branchiostoma floridae] | 1.0e-25 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 2 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_374.1_29221.t1 |
---|---|
Definition | - |
>pfu_aug1.0_374.1_29221.t1 atggaacagaaatttaacccagagacagctagaatttaccattttcggtacatgagggaatatcgggctatctgtgtgct gtggggtttactgtccatcatttggtgtatcctcaacttagtaacattcgtccagcctcagtgggtcggagattctccag aaagcccgggctttgggcatttgggcgttttccagtactgttaccctgacaatgcccagggacggtatgtgtgttcagga tctttcacggattttgacacgatcttgaatgattccttcaaagcgacaacgttcttcgtcggagtatcatgtctcctcat gttgatcaccgtagcggctttgctgttgtttttctgcttcaagaaaacctttgtcttttatttttgcggtattatggaac tcatatcagctgaactgaatggtttttctgcagagagcatgtctaagcgatccatccccatcaaccccgtggtgactgta ccagcggacagcgcccgatcagcttctaacttccagctttaa |
Protein
Protein ID | pfu_aug1.0_374.1_29221.t1 |
---|---|
Definition | - |
>pfu_aug1.0_374.1_29221.t1 MEQKFNPETARIYHFRYMREYRAICVLWGLLSIIWCILNLVTFVQPQWVGDSPESPGFGHLGVFQYCYPDNAQGRYVCSG SFTDFDTILNDSFKATTFFVGVSCLLMLITVAALLLFFCFKKTFVFYFCGIMELISAELNGFSAESMSKRSIPINPVVTV PADSARSASNFQL |