Gene
Gene Model ID | pfu_aug1.0_4230.1_16316 |
---|---|
Locus | scaffold4230.1 : 19216 ... 21354 : + |
To GenomeBrowser | scaffold4230.1:19216..21354 |
Genes list of scaffold | scaffold4230.1 |
Synonym | pfu_aug2.0_3.1_10053 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4230.1_16316.t1 | 1 | 1 | AIG1 | 27 | 178 | 2.6e-18 | 65.9 | 7.9e-20 | 1.1e-16 | 60.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4230.1_16316.t1 | gi|47213898|emb|CAF95840.1| | unnamed protein product, partial [Tetraodon nigroviridis] | 4.0e-13 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_4230.1_16316.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4230.1_16316.t1 atgggaagtgactctctccttcaagcctcaatagctgaatttcttttacaacttcaaaactcatcgaacacttctccaag tgacaggtgtcatgtgacacacaatgttgttggtgacaaggacatcgttgtgataaatgctcctggcctacttgacggta atctgagtgaagaaaaattaaaactagaactacagcgtctatactttcagtcatccccaggtccgcacgtcatgctgtat gtaagtaagtgttacgaacgtgatatagacaaggctgtgtatgaaaggatggtcgccatctttggcaaggaattagtgga taggtctatttttgtatttcaggaatatggtgatatgatggatttttctttgtcaatgaggagaccggctaggtttaaaa gaaaagtaccggtatctcagagaactcgaaacgaacactctgaattactgagtaaaatagaggaggttgttcaagagtat aacggtacgtactttgtaaatgagatgctaagagaggcagaaaaatgtctccaagagcacacaaaaattctgctgtcgaa gactcaaactggaaaagaactggaaatgttaaaacaacagcttctggatatgaaatccaagcaggaagaggataagaaaa ggatagaagagttagaaggacgaatacatcaggcaactgaggcgagtaataaaacagaagtgactttgaggaaagaggag cgagataaatttatcaatgacgaaatgatgcagagagtgtatagaggacttatgtatgttagtgaaaaactcatattaca aggaattgttgtggtggttagatcctatctaggattttga |
Protein
Protein ID | pfu_aug1.0_4230.1_16316.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4230.1_16316.t1 MGSDSLLQASIAEFLLQLQNSSNTSPSDRCHVTHNVVGDKDIVVINAPGLLDGNLSEEKLKLELQRLYFQSSPGPHVMLY VSKCYERDIDKAVYERMVAIFGKELVDRSIFVFQEYGDMMDFSLSMRRPARFKRKVPVSQRTRNEHSELLSKIEEVVQEY NGTYFVNEMLREAEKCLQEHTKILLSKTQTGKELEMLKQQLLDMKSKQEEDKKRIEELEGRIHQATEASNKTEVTLRKEE RDKFINDEMMQRVYRGLMYVSEKLILQGIVVVVRSYLGF |