Gene
Gene Model ID | pfu_aug1.0_4230.1_16317 |
---|---|
Locus | scaffold4230.1 : 21500 ... 25225 : - |
To GenomeBrowser | scaffold4230.1:21500..25225 |
Genes list of scaffold | scaffold4230.1 |
Synonym | pfu_aug2.0_3.1_10052 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4230.1_16317.t1 | 1 | 1 | C1q | 28 | 151 | 6.5e-23 | 81.1 | 1.0e-26 | 7.8e-23 | 80.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4230.1_16317.t1 | gi|325504439|emb|CBX41719.1| | putative C1q domain containing protein MgC1q70 [Mytilus galloprovincialis] | 6.0e-18 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_4230.1_16317.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4230.1_16317.t1 atgatggggaagggatccgtctgtcttctacttatgtttgttacagtttccctatgccaggatatgaatgtagggaaagc tgctttcagtgcagtccggaatgagaaagcagttctaccaccgttttcagtgattatatttgatgaggtgacgacaaact accaaatggcttacaatgcctcaactggaaatttcaatgctccaagtaatggtatatacgtgttcacatggaccgtagcc accaaatggggacagtggcagacgacacaactcatgtgtaatgacgatgcgatagccaacattgtagctgatagttataa gaacggagatagaagtacagccactggtacaatggttctcagtcttcaagcaaacgatagggtgtacgtgagaaccggac gtcttggtgatcgcatgatcttaaaaaatatgttttgtaccttcagcggatggaagttatatgatttatag |
Protein
Protein ID | pfu_aug1.0_4230.1_16317.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4230.1_16317.t1 MMGKGSVCLLLMFVTVSLCQDMNVGKAAFSAVRNEKAVLPPFSVIIFDEVTTNYQMAYNASTGNFNAPSNGIYVFTWTVA TKWGQWQTTQLMCNDDAIANIVADSYKNGDRSTATGTMVLSLQANDRVYVRTGRLGDRMILKNMFCTFSGWKLYDL |