Gene
Gene Model ID | pfu_aug1.0_4300.1_16335 |
---|---|
Locus | scaffold4300.1 : 136 ... 19585 : + |
To GenomeBrowser | scaffold4300.1:136..19585 |
Genes list of scaffold | scaffold4300.1 |
Synonym | pfu_aug2.0_5.1_16677 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4300.1_16335.t1 | 2 | 1 | Tim17 | 16 | 35 | 4.9e-29 | 100.9 | 0.46 | 6900.0 | -3.0 |
pfu_aug1.0_4300.1_16335.t1 | 2 | 2 | Tim17 | 124 | 246 | 4.9e-29 | 100.9 | 3.3e-33 | 4.9e-29 | 100.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4300.1_16335.t1 | gi|72006105|ref|XP_783220.1| | PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-B [Strongylocentrotus purpuratus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 1 |
mantlePallium | 1 |
Transcript
Transcript ID | pfu_aug1.0_4300.1_16335.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4300.1_16335.t1 atgcaccggaccgacccaaggcctcgttttcgcgagacccatgacgtcacgacgaacatccctatgcagaaacatatcaa tttttctgcaaccagtacgaaagatcccagtaacaagtacgaaagatcccgtacgaaaaatctcggtatgaaacggtatc ggaacgaaagatcccggaacctaggcaaagcctatataggagagcacagtattcaagtttccttccttcgatatcagtat gtgttacaagggtcatccggatttttttctaactatgttgacctaattttcgtctttagtctatattttaaaccggaagt agatcaccttaacactcagggtgcaccagactcggtaccagagataactccatggcgaatagtggatgattgtggtggag ccttttctatgggccttataggcggctctctgtttcatgctattggaggattcagaaatgctaaagggggtttcacgaac aggctggctggtatgaaaactggaattaaagtgaaatctcctgtaactggtggtaattttgcagtgtggggaggtttatt ttcagctattgactgttctttggtatatataaggaaaaaagaggatccattcaactctatagccagtggtgcattaacag gagctgtccttgcatgtagaaatggtccagttgccatggtcggatcagcagcaataggaggccttttgctgggattaatt gaaggagttggtataatgatgaataaaatgatggcagatcaatttaatccagccaatagaatgatgatggaggaagcccc tccccctgggccattgccaatctcgtcgccgtcacaagattccgctccaacatcatcgtttccgtttacgacgccgtacc aggcacatcagtga |
Protein
Protein ID | pfu_aug1.0_4300.1_16335.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4300.1_16335.t1 MHRTDPRPRFRETHDVTTNIPMQKHINFSATSTKDPSNKYERSRTKNLGMKRYRNERSRNLGKAYIGEHSIQVSFLRYQY VLQGSSGFFSNYVDLIFVFSLYFKPEVDHLNTQGAPDSVPEITPWRIVDDCGGAFSMGLIGGSLFHAIGGFRNAKGGFTN RLAGMKTGIKVKSPVTGGNFAVWGGLFSAIDCSLVYIRKKEDPFNSIASGALTGAVLACRNGPVAMVGSAAIGGLLLGLI EGVGIMMNKMMADQFNPANRMMMEEAPPPGPLPISSPSQDSAPTSSFPFTTPYQAHQ |