Gene
Gene Model ID | pfu_aug1.0_4931.1_30822 |
---|---|
Locus | scaffold4931.1 : 74866 ... 79045 : + |
To GenomeBrowser | scaffold4931.1:74866..79045 |
Genes list of scaffold | scaffold4931.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4931.1_30822.t1 | 1 | 1 | IPPT | 14 | 120 | 1.2e-11 | 44.1 | 1.1e-15 | 1.6e-11 | 43.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4931.1_30822.t1 | gi|350397955|ref|XP_003485043.1| | PREDICTED: tRNA dimethylallyltransferase, mitochondrial isoform X1 [Bombus impatiens] | 2.0e-34 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_4931.1_30822.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4931.1_30822.t1 atgatttgtatggtgtaccaatgtgtgatatataattacagggccttagtggtgtatgatatgcatggtgtaccaatgag tgaagcattcaaagcccagaaaatagaccaggactccaaacgtggaccattgaggtacaaagatgtctgtgtgttctggg tacagagtgacatgaaagttctaggtgagaggatagacaaacgtacagatgggatgattgatcgaggactgattcaagaa ctattagattttcaccagcaatataatgtgagcagaattcaagaaaacaaagaagtggattacacacatgggatttttca gagcatcggatttaaggaattccatgagtaccttatcatgtctgaagatgagagacagtctgaggcaggacaaaatttgc tgaaaaaaagtaaagacactttcaaaataaggttttggccaatcacattactcttttgtatagtaccggtattttaccca cttaacacaataaatgatgtcatggcttgctatgttttggagatacatgtactgtga |
Protein
Protein ID | pfu_aug1.0_4931.1_30822.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4931.1_30822.t1 MICMVYQCVIYNYRALVVYDMHGVPMSEAFKAQKIDQDSKRGPLRYKDVCVFWVQSDMKVLGERIDKRTDGMIDRGLIQE LLDFHQQYNVSRIQENKEVDYTHGIFQSIGFKEFHEYLIMSEDERQSEAGQNLLKKSKDTFKIRFWPITLLFCIVPVFYP LNTINDVMACYVLEIHVL |