Gene
Gene Model ID | pfu_aug1.0_52017.1_63412 |
---|---|
Locus | scaffold52017.1 : 1 ... 4075 : - |
To GenomeBrowser | scaffold52017.1:1..4075 |
Genes list of scaffold | scaffold52017.1 |
Synonym | NA |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | Tbx1/10 |
Description | High Blast hits to various organisms Tbx1 and Tbx10.NJ tree shows an affinity to HsTbx1 and HsTbx10. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_52017.1_63412.t1 | 2 | 1 | T-box | 1 | 91 | 6.99949e-42 | 142.9 | 2.5e-40 | 3.7e-36 | 124.3 |
pfu_aug1.0_52017.1_63412.t1 | 2 | 2 | T-box | 88 | 107 | 6.99949e-42 | 142.9 | 4.3e-09 | 6.4e-05 | 22.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_52017.1_63412.t1 | gi|194218551|ref|XP_001917000.1| | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_52017.1_63412.t1 |
---|---|
Definition | - |
>pfu_aug1.0_52017.1_63412.t1 atgtttcccacatttcaagtgcgcctgtacggactggatccaatggcggattacatggttatgatggacttcgtgccgtg tgacgacaagcgatatagatattccttccatagctctagctgggtggtggccgggaaggcggatccacacatgcctgggc ggatccatgtccaccccgactctcccgccaagggatcacaatggatgaagcaggtggtgtcctttgacaaactcaaactg accaataatttgatggatgacaacggccatataacacaacttaaaatagccagtaatccatttgctaaaggtttcagaga tgtggatccaaacgaatggtaa |
Protein
Protein ID | pfu_aug1.0_52017.1_63412.t1 |
---|---|
Definition | - |
>pfu_aug1.0_52017.1_63412.t1 MFPTFQVRLYGLDPMADYMVMMDFVPCDDKRYRYSFHSSSWVVAGKADPHMPGRIHVHPDSPAKGSQWMKQVVSFDKLKL TNNLMDDNGHITQLKIASNPFAKGFRDVDPNEW |