Gene
Gene Model ID | pfu_aug1.0_5215.1_45145 |
---|---|
Locus | scaffold5215.1 : 112325 ... 121565 : - |
To GenomeBrowser | scaffold5215.1:112325..121565 |
Genes list of scaffold | scaffold5215.1 |
Synonym | pfu_aug2.0_38.1_26717 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_5215.1_45145.t1 | 1 | 1 | IBR | 21 | 68 | 2.1e-08 | 33.9 | 5.6e-12 | 2.1e-08 | 33.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_5215.1_45145.t1 | gi|291233619|ref|XP_002736743.1| | PREDICTED: E3 ubiquitin-protein ligase arih1-like isoform X1 [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
maleGonad | 3 |
Transcript
Transcript ID | pfu_aug1.0_5215.1_45145.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5215.1_45145.t1 atgtatatttcagataccctctacagtcacaagaatcttgttgaatcatttcaaatgggacaaggaaaaacttatggaaa ggaatgtccaaaatgtcatgttaccattgagaaagatggagggtgtaatcacatggtgtgtaaaaaccagaactgtaaag ctgatttttgttgggtgtgtctaggcccctgggagcctcatggatcttcatggtataactgtaatagatatgatgaagat gaagcaaagaaggcaagagatgcccaagagcattctaggtcagctctacagagataccttttctactgcaacagatacat gaatcacatgcagagtctcaagtttgaaaacaaagtatacctcttcttgtatatcttattgattttgttgtga |
Protein
Protein ID | pfu_aug1.0_5215.1_45145.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5215.1_45145.t1 MYISDTLYSHKNLVESFQMGQGKTYGKECPKCHVTIEKDGGCNHMVCKNQNCKADFCWVCLGPWEPHGSSWYNCNRYDED EAKKARDAQEHSRSALQRYLFYCNRYMNHMQSLKFENKVYLFLYILLILL |