Gene
Gene Model ID | pfu_aug1.0_537.1_07550 |
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Locus | scaffold537.1 : 20716 ... 37667 : + |
To GenomeBrowser | scaffold537.1:20716..37667 |
Genes list of scaffold | scaffold537.1 |
Synonym | pfu_aug2.0_223.1_10465 |
Manual annotation
Study field | Reproduction |
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Gene name | adenosine deaminase |
Description | Best hit to AF403115 (chicken). 739 bits, 0.0 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_537.1_07550.t1 | 2 | 1 | dsrm | 104 | 161 | 1.1e-28 | 99.5 | 4.5e-15 | 1.7e-11 | 44.5 |
pfu_aug1.0_537.1_07550.t1 | 2 | 2 | dsrm | 245 | 303 | 1.1e-28 | 99.5 | 5.2e-18 | 1.9e-14 | 53.9 |
pfu_aug1.0_537.1_07550.t1 | 1 | 1 | A_deamin | 377 | 698 | 0.0 | 365.3 | 0.0 | 0.0 | 364.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_537.1_07550.t1 | gi|226374647|gb|ACO52475.1| | RNA transcript variant b adenosine deaminase [Doryteuthis opalescens] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_537.1_07550.t1 |
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Definition | - |
>pfu_aug1.0_537.1_07550.t1 atgcctttttacagcacgagtcgaaattttcgttttcagaaacctttcggaaacatcaaacgtcggatcatgtttgataa gaatcgtttcttggctaattatataatgtttaatcagtggatatttactctgtcatttgttcatctgttaccgctgacaa atctgttcgtgctgacattgtttgatgttcagaaatttatctttatcgacggtacaggctctagtcacgacatgctgcgt aagaggaaacaccttggtgatgcacaggttattctgggtaaaaagaaacagaaactacagaatgccgggccaaagaatgc cctgatgcaactcaacgaaatcaaacccggactggaattccagagtggacctgtccatgctccgaccttcattatgtgtg tagaggtcaacggcacaaagttcgaaggtcaagggtcaaccaaaaagatcgctaagctacacgcggcagagaaagccctg aaatcctttgtacagttccccaatgcgtcagaggtccataaggtgatgggtaggaagataacggatgctgattttacgtc agacgatgcggacatggtacacggtagtgacatgctgttcaataactttgagaatgaagtaaaggggcaagagagcatgg atctcagtaatggaaaggattccaatgggtctgtcaacatgccaaacggtaaaaagtctgtcgtaccgtcaaaccccgag ggtaaaaatcctgtgatgattcttaatgaactacgaccagggctgaaataccagtacgtgtcagagcagggagaaagcca cgctaagagttttactatgtcagtaaccgtagacggacaaaagtttgagggaacgggaagaaacaagaaactggcaaaat ccagggcagctcaaatggcacttactaaaatattcaacttggaatttagcttcaaaccaggtacgaagcctgtagaaaag ctatcagggagtagtgtaccacaggagcttgcagatctagtatcaaaactggttcttgataagtttggagagcttaccaa caacttcactagtcctctagccaggagaaaagtcttagctggcatcgtcatgacaacaggacagtcatcagaccatgcgt cagttataagtataacgacaggcactaagtgtataaacggtgaatacatgagtgacgagggattatcagtgaacgattgt cacgccgaagtcatcggcagacgagttctcatgcattacttctacaacgagcttgaaaaacatctatcaagtgatagcag cgttaggtcgtcgtctatatttatagagagaccggagggaggctaccaactcaaagaagatattcactttcacctatata taagcacggccccgtgtggggactcgagaattttctctcctcacgagaacattaaaggtgcggacactcaccccaacagg aaagccaggggtcagctccgtacgaagatagagtcaggagaggggacaataccggtgaagtcagaaggtatacagacgtg ggacggcatcctggagggagggagactactcacgatgtcgtgtagcgataaaatagccaggtggaatgtactaggtgttc aaggttccttacttagccatttcatacagcccatatactatgacagtttaatattaggcagcctgtaccacggagagcac ctgttacgtgccgtttattccagagtgtctaatatcgagggcgtcaaatcaccgtatcgtctaaatcaacctttccttag tggtatcagcaatccagaatcacggcagccggggaaagctccaaatatagccgttaactggtgtatgggagataactcct tcgaagttatcaacacaatgacgggaaagacagaacagggtaattcatcaagactttgtaagcaagcgtttttccgccaa ttttgcaatctttatggcaaactctcttcatgtaccagtcagagcgtgaccgcacaaccgaacctttattccgaggcaaa agtatcagtaatggactatcagttaacgaagaggcagctttacgaagcattccagaaggctggttacggaagatgggtga aaaagccgatagaacaagaccagtttggtctactactgcagtaa |
Protein
Protein ID | pfu_aug1.0_537.1_07550.t1 |
---|---|
Definition | - |
>pfu_aug1.0_537.1_07550.t1 MPFYSTSRNFRFQKPFGNIKRRIMFDKNRFLANYIMFNQWIFTLSFVHLLPLTNLFVLTLFDVQKFIFIDGTGSSHDMLR KRKHLGDAQVILGKKKQKLQNAGPKNALMQLNEIKPGLEFQSGPVHAPTFIMCVEVNGTKFEGQGSTKKIAKLHAAEKAL KSFVQFPNASEVHKVMGRKITDADFTSDDADMVHGSDMLFNNFENEVKGQESMDLSNGKDSNGSVNMPNGKKSVVPSNPE GKNPVMILNELRPGLKYQYVSEQGESHAKSFTMSVTVDGQKFEGTGRNKKLAKSRAAQMALTKIFNLEFSFKPGTKPVEK LSGSSVPQELADLVSKLVLDKFGELTNNFTSPLARRKVLAGIVMTTGQSSDHASVISITTGTKCINGEYMSDEGLSVNDC HAEVIGRRVLMHYFYNELEKHLSSDSSVRSSSIFIERPEGGYQLKEDIHFHLYISTAPCGDSRIFSPHENIKGADTHPNR KARGQLRTKIESGEGTIPVKSEGIQTWDGILEGGRLLTMSCSDKIARWNVLGVQGSLLSHFIQPIYYDSLILGSLYHGEH LLRAVYSRVSNIEGVKSPYRLNQPFLSGISNPESRQPGKAPNIAVNWCMGDNSFEVINTMTGKTEQGNSSRLCKQAFFRQ FCNLYGKLSSCTSQSVTAQPNLYSEAKVSVMDYQLTKRQLYEAFQKAGYGRWVKKPIEQDQFGLLLQ |