Gene
Gene Model ID | pfu_aug1.0_5668.1_31013 |
---|---|
Locus | scaffold5668.1 : 29369 ... 38135 : - |
To GenomeBrowser | scaffold5668.1:29369..38135 |
Genes list of scaffold | scaffold5668.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_5668.1_31013.t1 | 1 | 1 | Pkinase | 113 | 217 | 2.0e-18 | 66.5 | 7.2e-22 | 2.7e-18 | 66.0 |
pfu_aug1.0_5668.1_31013.t1 | 1 | 1 | Pkinase_Tyr | 119 | 198 | 1.6e-08 | 33.9 | 6.9e-12 | 2.6e-08 | 33.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_5668.1_31013.t1 | gi|348517688|ref|XP_003446365.1| | PREDICTED: serine/threonine-protein kinase LATS1 [Oreochromis niloticus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
8-16cell | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_5668.1_31013.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5668.1_31013.t1 atgttggttggtcaaccgccattttacgcggccacaccggccgaaactcaatttaagtctggcactggtctctttggcta taagtctggcactggtctctttggctataagtctgacactggtctctttggctataagtctgacactggtctctttggtt ataaaaacgtgttgtcatttgcaattcatgattcaatgatacgattgtgtagtgttcacggtctacatccccgacaagat tccatggatgttagttgtgctgttgaaatcgagtgccaatgtgacaaaataagtaaaccattagagaggagacgccaacg acaacgccatcggtgcctcgctcactcactagtggggacgccaaactatatcgcacctgaagtcctcaaacgccaagggt acacatcgtgctgtgattggtggagcgtaggcgtcatattatacgagatgttggttggtcaaccgccattttacgcggcc acaccggccgaaactcaatttaaggtgatacactgggacgagacacttcactttccaccagagccaaagttgtgtaaaga agcttccaacatgattctctcattgtgctgtggtgtcaacgaaagactcggccgaaatggcgcaacggaaattaagaaac atccattctttgcgggactaaattttgaaggtttaagaaagtcgaaggcaccgtacaaacccacaatcagtcatgctacc gacacctcgaatttcgacgattacgacccgaaaattcgaagtgacgatgaagatgatgagacacagaaacccgatcatcc cgtaaacggcaaacatcccgagcatgcgttctttgagttcacattccgtcgtttctttgatgacggtggtcatccctacc cctccatgaaggacgaacccaaagatgccgatgtccctccccaaaaagactccatcgcccccgtctttgtatga |
Protein
Protein ID | pfu_aug1.0_5668.1_31013.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5668.1_31013.t1 MLVGQPPFYAATPAETQFKSGTGLFGYKSGTGLFGYKSDTGLFGYKSDTGLFGYKNVLSFAIHDSMIRLCSVHGLHPRQD SMDVSCAVEIECQCDKISKPLERRRQRQRHRCLAHSLVGTPNYIAPEVLKRQGYTSCCDWWSVGVILYEMLVGQPPFYAA TPAETQFKVIHWDETLHFPPEPKLCKEASNMILSLCCGVNERLGRNGATEIKKHPFFAGLNFEGLRKSKAPYKPTISHAT DTSNFDDYDPKIRSDDEDDETQKPDHPVNGKHPEHAFFEFTFRRFFDDGGHPYPSMKDEPKDADVPPQKDSIAPVFV |