Gene
Gene Model ID | pfu_aug1.0_6.1_57883 |
---|---|
Locus | scaffold6.1 : 102168 ... 108915 : - |
To GenomeBrowser | scaffold6.1:102168..108915 |
Genes list of scaffold | scaffold6.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6.1_57883.t1 | 2 | 1 | KxDL | 28 | 112 | 1.8e-25 | 88.6 | 2.5e-29 | 1.8e-25 | 88.6 |
pfu_aug1.0_6.1_57883.t1 | 2 | 2 | KxDL | 149 | 165 | 1.8e-25 | 88.6 | 0.54 | 4000.0 | -2.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_6.1_57883.t1 | gi|241596084|ref|XP_002404521.1| | conserved hypothetical protein [Ixodes scapularis] | 6.0e-29 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
>Adult tissues | |
adductorMuscle | 1 |
Transcript
Transcript ID | pfu_aug1.0_6.1_57883.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6.1_57883.t1 atgtctacgaccacggaagaaaatgatgacataatggaagctgaggctgcgtctagaaattctgagatatttacagaagc gttggttgatcaagtgaacaaagatgatgttagttctatggtggaaattcagactgacatgctctcaagatatgaaaaga caaatgaaatgctcatcaatttcaacatgctttcactggcaagatatgaggctaccagtaaggagttcaaacagcacaca caagtactgtacgacatgaaaaaagacttggataacgtattcagacgaatcagattacttaaacagagattgggatccat gtacccagaagcttttgcagcttgcagtgatgtgtacaatatactagatgaggaggaagaagacaaggataatgaagggg aactgaaggaaagcgacaaatcaagcacaaaagaaaataattctgaattagaaaactcacgtgtacacaacctgaattca gaagtggcatccagtttagctaaagtgacttccccagaaatatcagtaaatgtagagatacacgtagactcagataactg tgataatgtcaaacatgtagaatgtgatcaacttgacatggacaaagacgatcatttacaaaactcagatatccatgata atagtcaaagtacaaacttggcaggcaatgggcaaagtgaacaataa |
Protein
Protein ID | pfu_aug1.0_6.1_57883.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6.1_57883.t1 MSTTTEENDDIMEAEAASRNSEIFTEALVDQVNKDDVSSMVEIQTDMLSRYEKTNEMLINFNMLSLARYEATSKEFKQHT QVLYDMKKDLDNVFRRIRLLKQRLGSMYPEAFAACSDVYNILDEEEEDKDNEGELKESDKSSTKENNSELENSRVHNLNS EVASSLAKVTSPEISVNVEIHVDSDNCDNVKHVECDQLDMDKDDHLQNSDIHDNSQSTNLAGNGQSEQ |