Gene
Gene Model ID | pfu_aug1.0_6.1_57886 |
---|---|
Locus | scaffold6.1 : 128802 ... 138615 : - |
To GenomeBrowser | scaffold6.1:128802..138615 |
Genes list of scaffold | scaffold6.1 |
Synonym | pfu_aug2.0_486.1_20827 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6.1_57886.t1 | 1 | 1 | Tetraspannin | 9 | 235 | 0.0 | 159.5 | 0.0 | 0.0 | 159.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_6.1_57886.t1 | gi|291232527|ref|XP_002736204.1| | PREDICTED: tetraspanin-3-like [Saccoglossus kowalevskii] | 7.00649e-44 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
adductorMuscle | 1 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_6.1_57886.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6.1_57886.t1 atggcgtctggttgtacagttacctctaagatattcctttgggcgttaggacttatattttggggagccgcagcaggatt attttttgtgggaggatgggtgttctcaacctacaaacattacaatgagatcacagaggccaactttaccctgataccag ctgttattatcatttgtgtgggcgtcttcctctttattattggcatcactagctgtgttgcagcttgtaaggaaaacaag tgtctcttggcttgtttgttctcaatgctactggttgttctcacagcagagataggagctggagccctgggttatgcctt caggaaagatgtagcggatgctgttgagaatggcctacacaaggcaatcagagaatatgaaagcggaacacttaaagatc aagttgactacttacaaaaagagttacactgctgtggattcaccaacgcatcagattggtttaaacctgatacaaaatgg caccttaaccatacctacgtccctgaaagttgctgtgcacactcaaattgttccctacaatcaaggacattgacatcaaa ctccacagcattctatgaagagggatgctacaacaagcttgaggatacactacagtcgaatctggcctacatagcaggaa ttgctattacatttgctgtaatccagatcctaggaatgattgccagttgcgtattattctgccgatccaaggaagtgaag tatgagccacttggaggtcaatatccaggactgagggtctaa |
Protein
Protein ID | pfu_aug1.0_6.1_57886.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6.1_57886.t1 MASGCTVTSKIFLWALGLIFWGAAAGLFFVGGWVFSTYKHYNEITEANFTLIPAVIIICVGVFLFIIGITSCVAACKENK CLLACLFSMLLVVLTAEIGAGALGYAFRKDVADAVENGLHKAIREYESGTLKDQVDYLQKELHCCGFTNASDWFKPDTKW HLNHTYVPESCCAHSNCSLQSRTLTSNSTAFYEEGCYNKLEDTLQSNLAYIAGIAITFAVIQILGMIASCVLFCRSKEVK YEPLGGQYPGLRV |