Gene
Gene Model ID | pfu_aug1.0_6.1_57888 |
---|---|
Locus | scaffold6.1 : 144028 ... 150085 : - |
To GenomeBrowser | scaffold6.1:144028..150085 |
Genes list of scaffold | scaffold6.1 |
Synonym | pfu_aug2.0_486.1_20826 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6.1_57888.t1 | 1 | 1 | RNA_GG_bind | 241 | 324 | 4.6e-26 | 90.3 | 7.4e-30 | 1.1e-25 | 89.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_6.1_57888.t1 | gi|253314458|ref|NP_064380.3| | phosphorylated adapter RNA export protein isoform 1 [Mus musculus] | 2.0e-23 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_6.1_57888.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6.1_57888.t1 atgtcagaggtggaatcctctgtgagccaagctgttacaatggctatcccaagagtctctgctgcacctccagctacctc tacacagccatcgtcatatgacagcagaaatagtacagtattcaggaatgtaccaaggcaccattcatctagtgacgaat ccagtgattccctcagtgatgaagatacagatttatggaggtgtaaaaaggctaaatatttttcttcctccaaaagggaa gattctatggttactgaactgccagatgaaatcaaatctccaccgcgtaataacggattttcaaaattcgtacagccgag tggttcagtgaaacgtaagatcaacaatgtctggggatctgtcttaactgagcaatgcttgactgaaaatatgaaaagtg tggaagtgtataaaaatccagaactagtgaatagtgacagaaaagtagagaaatatgacttcactaatgcatacgatgat gacaggccggatgccatcgatatcttccccaaaacaactaacgatccctttgaaaatgtaatagcatctgaccatgaggg agattacttatctcatagacaaggtacaaagagaaagaggaaggcgaaagatagaattggaagaagacatgttaaggaca gattgaacgattacccaccagttaaaactctcagtgaaatcagtgacgagcctgtaactgtagaagacagtgaacaagac attgttagttacatagctaaagaattgtttgaacgtaaagtggaattaattgcaaaaattgtccgagttgtcggtaagga aaaagccttagaggttttcgaagaagtgttgaagatagaggaaaatggaggcatgcttaccaatgatggttttagaagga gggccccaggaggagtttacttcactctaatgaaaacagataaaggccttactgcagagcagcatgatgagatatttgcc gaggaggaaagaaattataaggaatggtgcaaaaaggcaaagaaagaaagaagaaacaaagcacggaagatgaaaagaat gtacaagaaattacctcagtcaaagttattagagacaggacataaaaatgacgaatgcagtactagcaacaggaaaggtg aagatgatatgaactctgataattctagcggagaagacgacggcaatatggatttaatggacagtgtgaatgacagacaa acaaacaaaggtgctatgattacggacataggcaaggaggaatccggggctgatatcatagatttaggactcgatgaggg ggagataatagattaa |
Protein
Protein ID | pfu_aug1.0_6.1_57888.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6.1_57888.t1 MSEVESSVSQAVTMAIPRVSAAPPATSTQPSSYDSRNSTVFRNVPRHHSSSDESSDSLSDEDTDLWRCKKAKYFSSSKRE DSMVTELPDEIKSPPRNNGFSKFVQPSGSVKRKINNVWGSVLTEQCLTENMKSVEVYKNPELVNSDRKVEKYDFTNAYDD DRPDAIDIFPKTTNDPFENVIASDHEGDYLSHRQGTKRKRKAKDRIGRRHVKDRLNDYPPVKTLSEISDEPVTVEDSEQD IVSYIAKELFERKVELIAKIVRVVGKEKALEVFEEVLKIEENGGMLTNDGFRRRAPGGVYFTLMKTDKGLTAEQHDEIFA EEERNYKEWCKKAKKERRNKARKMKRMYKKLPQSKLLETGHKNDECSTSNRKGEDDMNSDNSSGEDDGNMDLMDSVNDRQ TNKGAMITDIGKEESGADIIDLGLDEGEIID |