Gene
Gene Model ID | pfu_aug1.0_6452.1_60017 |
---|---|
Locus | scaffold6452.1 : 10776 ... 25838 : + |
To GenomeBrowser | scaffold6452.1:10776..25838 |
Genes list of scaffold | scaffold6452.1 |
Synonym | pfu_aug2.0_571.1_04351 |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | Insulin-like growth factor 2 mRNA-binding protein 1 |
Description | NCBI BlastP top hit to Camponotus floridanus IGF2 mRNA-binding protein 1[EFN73581.1] |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6452.1_60017.t1 | 2 | 1 | KH_3 | 63 | 76 | 1.2e-10 | 40.7 | 0.045 | 170.0 | 2.0 |
pfu_aug1.0_6452.1_60017.t1 | 2 | 1 | KH_1 | 66 | 88 | 5.4e-15 | 54.7 | 0.007 | 26.0 | 4.5 |
pfu_aug1.0_6452.1_60017.t1 | 2 | 2 | KH_1 | 109 | 173 | 5.4e-15 | 54.7 | 1.4e-16 | 5.3e-13 | 48.3 |
pfu_aug1.0_6452.1_60017.t1 | 2 | 2 | KH_3 | 116 | 161 | 1.2e-10 | 40.7 | 4.4e-13 | 1.6e-09 | 37.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_6452.1_60017.t1 | gi|307189125|gb|EFN73581.1| | 2.0e-31 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_6452.1_60017.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6452.1_60017.t1 atgtttgttgtgtctcgtgataaactccggggagttccaatcgctaatcggaatgcgggggacgtctcaaaactctactt gtgttggagcatattggattttattgattttgcgtttgtgccacagggcgcagcgtataccatactgccccagaagaatg gagagatgaatggtgagaggaaaggaccctccccacaactagatgaaaggaaggtcattataacaggctccgctgaagcc caatggaaggcgcagttctacattttcgacaaaataaagatggagggaaactttcagaggttagaggaggttcacctcag gtcagaggtcatggtaccaaggagtatgattggtcgaatcataggcaaaggaggtcaaaatgtacgtgaaatgcagagag tcagtggtgctatagtgaagctaccagacccaaacaaccaaaacccgacagataacgacgaagtcgctgtatccattata ggacatttttatgccatccaacccgctcagagaaggatccgatcactcgttcagcagcgaggtgcacctcagggaatggg cggcccccctcagaggcgtcctggcccaccaagacctcaacaaaatggcaaataa |
Protein
Protein ID | pfu_aug1.0_6452.1_60017.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6452.1_60017.t1 MFVVSRDKLRGVPIANRNAGDVSKLYLCWSILDFIDFAFVPQGAAYTILPQKNGEMNGERKGPSPQLDERKVIITGSAEA QWKAQFYIFDKIKMEGNFQRLEEVHLRSEVMVPRSMIGRIIGKGGQNVREMQRVSGAIVKLPDPNNQNPTDNDEVAVSII GHFYAIQPAQRRIRSLVQQRGAPQGMGGPPQRRPGPPRPQQNGK |