Gene
Gene Model ID | pfu_aug1.0_6452.1_60020 |
---|---|
Locus | scaffold6452.1 : 44206 ... 68145 : - |
To GenomeBrowser | scaffold6452.1:44206..68145 |
Genes list of scaffold | scaffold6452.1 |
Synonym | pfu_aug2.0_571.1_04347 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6452.1_60020.t1 | 1 | 1 | Integrin_alpha2 | 249 | 636 | 8.7e-32 | 110.5 | 3.3e-35 | 1.2e-31 | 110.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_6452.1_60020.t1 | gi|148677301|gb|EDL09248.1| | integrin alpha 9, partial [Mus musculus] | 7.0e-29 |
Transcript
Transcript ID | pfu_aug1.0_6452.1_60020.t1 |
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Definition | - |
>pfu_aug1.0_6452.1_60020.t1 atggccgcagcggaaaactccgtaactgcttgtgcccctagatggataaacaaagtcaactcgagcgagtactacatgaa tggactttgctatgttataccatcaggatattttgctgaaaccaggtttataacacccagggtacgctcactactaaacc agttcccggacaaacagcacatcgcacctgattcggcccggaatgatatgacatgggaatacggattaggaacagccggc ttgtctgttatttacaatttgagtagtcagaggacttcggtgtcgtcagagaccttgttattggtaggagcacccacgta cagcaagcttacaaaatataacaagttctatacgagcacagtggagcagggagcagtgttcgtgtaccgactgaaagaaa atcaggctgatgctatccagatgctacagagctccactacagcaaagtcgagatttggtatggcaatgagtgacttagga gacattaacggggatgactttcacgatgttgtgattggagctccttttgaagaggaccaaaaaggggtgatttatattta caatggatacaaaaatggatttttggaaacacaaaggattgtgggaaatgacatggacacgagtcttagaggatattttg gatattcgtttgctcagaacaatattaactttaatggagataaatccaatgagtttgcagtgggtgcctttatgtcagac agcgcggtcatcctatttacccagcctgtgatagccatgcaggttacagctaggcagtcgacaaatctaacgaccatcgg tgaccctgatatgacaattcgtgcttgctttaaatatactggtgatagtacaattctaccaggagatgttaatgttgact ataagataagagctgatgtagagttcagcggaaggactaagcgagtgtgtatggttaacggccaattctgtgactatgaa gtgatggaacttaaccagcaaatcccgggatttaattttgatcctaaatgtctcacccccttcacagtgagacttactga cacgcaagaaatccgagagctgtttatcccaatcgtattcagtatccagttcaatatttctgacgccaatgcctgcactc gtaatatatgtcccgttattaaccgtttctatggaaaccttgacaatccaaccaccagggaagtgaaggcagctacggtt gatctgaagaagaatggatgtggtgcagacaacttatgtcaaacttatctaacgctacagtccgttgttgtgaagtatca tgactctgaaaacgtacttattctcggtcccaaatctaaaatgaccgtggacgtcaccgtgagagtgagcaatgaaccgt catataatacgaaaattagattcttatgtgaccaagaactttcatacgtacgttcaattgatgttggttcacaaatcgga atgaagtgctcagttattcggacaccgtttggacggatcgaaatcgaatgtgacacaaatccctctcagcttggagttga gagcggatctgagattaaagtaagcctggaatttgatgccagacttttgaagccaaatattaagtcgtttaaatttgaag ttgaggttgtaaccaaaagtattaatgcaaatataggacaaaatagaagaacactatacatacctgtaaaggcaaaagtg gatggagcatttgacaggttagcggccccagaagtgtacgttacaaagaaggacagagaagaatttgaaaccatgaagca catcatcacatttttcaacagaggtccgagtaacatagacgataacacaacctttaccgtaacatacccgtccggacgta taggagggaaatgggtcgtatccgtggtggagggagtggactgtacaaagcctgggggaagttgtcacatggtgaagtgt acagtacgaccaatccccgcagatagctacgttttattccgacttgtttattcggtggatccaaaattatatcaccgagc agggggtcaggatccgtctgtcaagtctgtagatctggtgtccaaggtggacgtccaattaccggcttccgtcacggcaa ctatgatacaaaatgacaatttcgctaaaaccgaagttttaccgtccaaacagaaagccgagccgataccgagttggata atagtcctggccgtagtggctgccttactcgtgataggaattattgtactaattctttggaaggataatcctggattatc ttag |
Protein
Protein ID | pfu_aug1.0_6452.1_60020.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6452.1_60020.t1 MAAAENSVTACAPRWINKVNSSEYYMNGLCYVIPSGYFAETRFITPRVRSLLNQFPDKQHIAPDSARNDMTWEYGLGTAG LSVIYNLSSQRTSVSSETLLLVGAPTYSKLTKYNKFYTSTVEQGAVFVYRLKENQADAIQMLQSSTTAKSRFGMAMSDLG DINGDDFHDVVIGAPFEEDQKGVIYIYNGYKNGFLETQRIVGNDMDTSLRGYFGYSFAQNNINFNGDKSNEFAVGAFMSD SAVILFTQPVIAMQVTARQSTNLTTIGDPDMTIRACFKYTGDSTILPGDVNVDYKIRADVEFSGRTKRVCMVNGQFCDYE VMELNQQIPGFNFDPKCLTPFTVRLTDTQEIRELFIPIVFSIQFNISDANACTRNICPVINRFYGNLDNPTTREVKAATV DLKKNGCGADNLCQTYLTLQSVVVKYHDSENVLILGPKSKMTVDVTVRVSNEPSYNTKIRFLCDQELSYVRSIDVGSQIG MKCSVIRTPFGRIEIECDTNPSQLGVESGSEIKVSLEFDARLLKPNIKSFKFEVEVVTKSINANIGQNRRTLYIPVKAKV DGAFDRLAAPEVYVTKKDREEFETMKHIITFFNRGPSNIDDNTTFTVTYPSGRIGGKWVVSVVEGVDCTKPGGSCHMVKC TVRPIPADSYVLFRLVYSVDPKLYHRAGGQDPSVKSVDLVSKVDVQLPASVTATMIQNDNFAKTEVLPSKQKAEPIPSWI IVLAVVAALLVIGIIVLILWKDNPGLS |