Gene
Gene Model ID | pfu_aug1.0_6626.1_67486 |
---|---|
Locus | scaffold6626.1 : 1 ... 17395 : + |
To GenomeBrowser | scaffold6626.1:1..17395 |
Genes list of scaffold | scaffold6626.1 |
Synonym | pfu_aug2.0_91.1_03590 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6626.1_67486.t1 | 2 | 1 | RRM_6 | 28 | 97 | 6.9e-28 | 96.4 | 2.5e-15 | 1.2e-11 | 44.3 |
pfu_aug1.0_6626.1_67486.t1 | 2 | 1 | RRM_1 | 30 | 96 | 7.2e-19 | 67.1 | 5.2e-14 | 2.6e-10 | 39.8 |
pfu_aug1.0_6626.1_67486.t1 | 2 | 2 | RRM_6 | 250 | 319 | 6.9e-28 | 96.4 | 4.0e-17 | 2.0e-13 | 50.1 |
pfu_aug1.0_6626.1_67486.t1 | 2 | 2 | RRM_1 | 252 | 316 | 7.2e-19 | 67.1 | 1.5e-09 | 7.6e-06 | 25.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_6626.1_67486.t1 | gi|344246789|gb|EGW02893.1| | Heterogeneous nuclear ribonucleoprotein H, partial [Cricetulus griseus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
maleGonad | 2 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_6626.1_67486.t1 |
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Definition | - |
>pfu_aug1.0_6626.1_67486.t1 tatttcgatcaaaaaagagtgaaatggattgggtcattaaacgggcaggacctggtcagatgccaggatcaaatgaagca gtagtgaggttaagaggtttaccattcggatgttcgaaagaggaaattgctcagtttttcacagggttggagattgtgcc caatgggataatgcttccggaagacagacagggtcgcagcacgggggaggcctacgtacagtttgctacacaagagattg cggaaaatgccctacttaaacacaaggagagaatagggcacaggtacatagagatcttcaagagtagcatgcaagaggca agtggagccatgggaaatgtgagcaggattcgccccctgatgggagggtccggaatgggtggcatgaatcgtccaggacc atatgaccgtagtagccgcctcgggatgggtggaggtatgggaatggggggaggaggaggaggtggaggtatggggggag ggatgggtggatatggcatgggcagaggaggacgcaatctcaaaggtttctttgatgatgactttgatgattatggaagt ggatatggaggtggaccaggatttggtggtcctcgacgggggatgatgggaaatatgaggcagcaatcacgaggcaggat gggaggagggcaaagcatgatgggtggaggaggaggaggtggtggtggaatgggcagaaatagaggaggcaccccaggca gccattacatcagtaaaacaggacattctgttcacatgagggggttaccattccaagctttggacagtgacattatagag ttcttttcaccccttggcgtgactccagtcagagttgagtttgagacaggtccaaatggaaggcccacgggggaggcaaa tgttgattttaagacacatcaagatgccgtagaggccatgcaaaaccacaagaaaaatatggaacacagatatattgagc tatttttaaattccacaccaaacctatcagggagatctagctacggatccgggggtggattcggtggtggaggtggaatg ggtggcagaatttgtgacagcgacttcgacagtggagattttaatggaaacggctttggcggtatgggtggatttggacc aagtggtggaaggatgggaatgggtggcaggatgaatcctaactacacagaattctaa |
Protein
Protein ID | pfu_aug1.0_6626.1_67486.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6626.1_67486.t1 FRSKKSEMDWVIKRAGPGQMPGSNEAVVRLRGLPFGCSKEEIAQFFTGLEIVPNGIMLPEDRQGRSTGEAYVQFATQEIA ENALLKHKERIGHRYIEIFKSSMQEASGAMGNVSRIRPLMGGSGMGGMNRPGPYDRSSRLGMGGGMGMGGGGGGGGMGGG MGGYGMGRGGRNLKGFFDDDFDDYGSGYGGGPGFGGPRRGMMGNMRQQSRGRMGGGQSMMGGGGGGGGGMGRNRGGTPGS HYISKTGHSVHMRGLPFQALDSDIIEFFSPLGVTPVRVEFETGPNGRPTGEANVDFKTHQDAVEAMQNHKKNMEHRYIEL FLNSTPNLSGRSSYGSGGGFGGGGGMGGRICDSDFDSGDFNGNGFGGMGGFGPSGGRMGMGGRMNPNYTEF |