Gene
Gene Model ID | pfu_aug1.0_6715.1_60087 |
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Locus | scaffold6715.1 : 1 ... 12425 : - |
To GenomeBrowser | scaffold6715.1:1..12425 |
Genes list of scaffold | scaffold6715.1 |
Synonym | pfu_aug2.0_1562.1_08446 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6715.1_60087.t1 | 1 | 1 | tRNA-synt_1b | 14 | 185 | 2.1e-38 | 132.1 | 5.89947e-42 | 2.9e-38 | 131.6 |
pfu_aug1.0_6715.1_60087.t1 | 1 | 1 | tRNA_bind | 267 | 352 | 1.7e-23 | 82.2 | 8.4e-27 | 4.2e-23 | 81.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_6715.1_60087.t1 | gi|109895056|sp|Q6TGS6.2|SYYC_DANRE | Tyrosine--tRNA ligase, cytoplasmic [Danio rerio] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_6715.1_60087.t1 |
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Definition | - |
>pfu_aug1.0_6715.1_60087.t1 atggtcacggagcacgatgccaagaaagcaggagctgaggtggtcaaacaagtagatcatccactgctcagtgggctgct gtacccaggactccaggcactggatgaggagtaccttaaggtagatgcccagtttggtggtgtggaccaaagaaaaatct tcacatttgccgaaaagtacctaccacatttaggatacaccaaaagaatacacttgatgaatccaatggtaccaggatta actggtagcaagatgagctcttctgaggaagattccaaaatagatttactggactcggcggcacaagtcaagaaaaaatt gggcaaggcgttttgtgaaccaggaaacgttacagacaatggtgtgctgtcattttgtaaacatgtgttgtttcctatca agacgaaagatggattcttggttaagagagatgaagccaatggcgggaacaccctgtacaagacatacgatgatttagag caggcttttgcaaaagaggaggtgcatccaggggacctgaaggcttcagtggaggtgtacctgaatgagctcttggatcc agtacgtaaagagtttgatacacctgagaataaaaaactcagcagtcaagcttacccggtagaaaagaaaaaaatcgttc aaaatggggagaaggacattgatcttactttgatgtccatgacattcaacatgtctgactttgtaaaacttaacattgaa aattcccgatcaaaattgttgttgaaggtgcacaattacatggtgattatgaacattgaacttattaacattgaacttaa gcaccccgatgctgaatctttgttcatagagacagtggacgtcggagaggaggcaccaaggacggtggtcagcggcttgg cgggactataccccatggaaaagttacaagaccgtctgggggtcttcatgtgcaatctcaaaccagtcaaaatgaggggt gttgagtctagggcaatgctaatgtgtgcttccgttgatgatccaagggcagtagagccattagatccaccagaggggag tgtaccgggagagagagtcgtctttgagggttatgagagtggcaagcctgacgaacagctcaatcctaaaaagaaagtat gggaaaaattacagcctgatttacgtacaagtggggaaggatgtgccgaatggcaaggaaatataatgaaaacagagaaa ggtccagtcaaagcagcgacattaaaaggagttccgattaggtga |
Protein
Protein ID | pfu_aug1.0_6715.1_60087.t1 |
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Definition | - |
>pfu_aug1.0_6715.1_60087.t1 MVTEHDAKKAGAEVVKQVDHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTFAEKYLPHLGYTKRIHLMNPMVPGL TGSKMSSSEEDSKIDLLDSAAQVKKKLGKAFCEPGNVTDNGVLSFCKHVLFPIKTKDGFLVKRDEANGGNTLYKTYDDLE QAFAKEEVHPGDLKASVEVYLNELLDPVRKEFDTPENKKLSSQAYPVEKKKIVQNGEKDIDLTLMSMTFNMSDFVKLNIE NSRSKLLLKVHNYMVIMNIELINIELKHPDAESLFIETVDVGEEAPRTVVSGLAGLYPMEKLQDRLGVFMCNLKPVKMRG VESRAMLMCASVDDPRAVEPLDPPEGSVPGERVVFEGYESGKPDEQLNPKKKVWEKLQPDLRTSGEGCAEWQGNIMKTEK GPVKAATLKGVPIR |