Gene
Gene Model ID | pfu_aug1.0_755.1_07654 |
---|---|
Locus | scaffold755.1 : 23025 ... 33285 : - |
To GenomeBrowser | scaffold755.1:23025..33285 |
Genes list of scaffold | scaffold755.1 |
Synonym | pfu_aug2.0_238.1_27084 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_755.1_07654.t1 | 1 | 1 | adh_short | 154 | 320 | 1.3e-35 | 122.7 | 1.6e-38 | 2.0e-35 | 122.1 |
pfu_aug1.0_755.1_07654.t1 | 1 | 1 | KR | 156 | 320 | 5.0e-17 | 62.1 | 6.9e-20 | 8.5e-17 | 61.3 |
pfu_aug1.0_755.1_07654.t1 | 1 | 1 | Epimerase | 157 | 378 | 1.3e-06 | 28.0 | 6.7e-09 | 8.2e-06 | 25.4 |
pfu_aug1.0_755.1_07654.t1 | 1 | 1 | adh_short_C2 | 162 | 372 | 2.1e-16 | 60.4 | 2.9e-19 | 3.6e-16 | 59.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_755.1_07654.t1 | gi|260827070|ref|XP_002608488.1| | hypothetical protein BRAFLDRAFT_128033 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
adductorMuscle | 1 |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_755.1_07654.t1 |
---|---|
Definition | - |
>pfu_aug1.0_755.1_07654.t1 atggaaatgacccccgtggactttgccgcggaatttatcgtcaagatgacgcaccatttacaacaaggtctgggtaaaat attccatgtaatcaacgatcgtcctttgtcctctagaatgatttttgagtggatgaatgctcacggatacccattggaga tcctgccatttaaagagtggaaagaaagaattttgaaggaaattacaaatgttggaaacgagcaagaggaaaatcaactg atgagaattttggagagttatgcaagtgatgcgaactttttcgaggatttgagcacatttaaagccgacaacatgcatca aatgttaccagatcttggaatgtcttatccttacattgatagttcaatgctcaagttttatttccatcaactgaatacta gacaaatcataagtatgcgccggtcaaggcatcacgcagtaggttcaagattggagggaaaggttgctatagtaacaggt gcttcgagtggtataggaaaagccatagcaacggccttggcgttggagggtgcgaaggttgccatggcagccagacgatt agagcggttacaagaacatcaaaaacagattgaggcccaaggaggggttgtaacttgtataaagactgacgtaacaaatc gaaacgaggtcaaagaattagtacgacaaacagagtctatacttggtcccgtggacatattggtaaacaatgccggtatc atgtactatacgatgatgaaaaatggcagggaggacgaatgggacaaacaaatagacttaaatgtcaaggggtttacaaa ctgcataggggctatattagaaggaatggtgcaaaggaaatcagggcatattgtgaacttgtcatcagacgctggaagaa agggtttccctgggctggcggtgtattcgggtaccaagttttacgtggagggtttgtcacaggcactcagacaggaggtg tgtggactggggataagggtgacgaacctacagccaggagacgtacggacggaactcctcacccataccactgataaaga ggctcaagatgcatatgacggaagccagaaatgtaagatactagaacctgaggacatcgccaacgctgtgttgtacgcgg tgacgcaaccagagtacgttggcgtccacgagatactcatagagccaagagaagcgccgttatga |
Protein
Protein ID | pfu_aug1.0_755.1_07654.t1 |
---|---|
Definition | - |
>pfu_aug1.0_755.1_07654.t1 MEMTPVDFAAEFIVKMTHHLQQGLGKIFHVINDRPLSSRMIFEWMNAHGYPLEILPFKEWKERILKEITNVGNEQEENQL MRILESYASDANFFEDLSTFKADNMHQMLPDLGMSYPYIDSSMLKFYFHQLNTRQIISMRRSRHHAVGSRLEGKVAIVTG ASSGIGKAIATALALEGAKVAMAARRLERLQEHQKQIEAQGGVVTCIKTDVTNRNEVKELVRQTESILGPVDILVNNAGI MYYTMMKNGREDEWDKQIDLNVKGFTNCIGAILEGMVQRKSGHIVNLSSDAGRKGFPGLAVYSGTKFYVEGLSQALRQEV CGLGIRVTNLQPGDVRTELLTHTTDKEAQDAYDGSQKCKILEPEDIANAVLYAVTQPEYVGVHEILIEPREAPL |