Gene
Gene Model ID | pfu_aug1.0_808.1_22313 |
---|---|
Locus | scaffold808.1 : 69710 ... 84365 : - |
To GenomeBrowser | scaffold808.1:69710..84365 |
Genes list of scaffold | scaffold808.1 |
Synonym | pfu_aug2.0_925.1_17936 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_808.1_22313.t1 | 1 | 1 | HAUS2 | 15 | 115 | 7.1e-21 | 74.5 | 1.9e-24 | 9.3e-21 | 74.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_808.1_22313.t1 | gi|260801351|ref|XP_002595559.1| | hypothetical protein BRAFLDRAFT_117486 [Branchiostoma floridae] | 1.0e-21 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_808.1_22313.t1 |
---|---|
Definition | - |
>pfu_aug1.0_808.1_22313.t1 atgtacccttttgctttcgggtcccaagtgtattttacatttttacaacagttagatctggacatagagaagagaatgtt ggatagggagaccaaagacttaacttacaccagtatgttggaggagaagatcaaggttattcaggagcttaacaaccatc ttcagtcggtgatcgacagtaaatcacagcttatcacccggttacaacagccgtttgtaggagattacataaagctagag gcacagtatcacagatttgctagtgaactatttccacagatagcgactatgatggcagacttcaataatcatctagaaaa tatcacttggaataaatctttgtcttttgatgatggcaaactgagttttaggatcatttccatagattttgatgacgtcc taatttgtctacatcagataccgtcccaaatgggaggacttcgacttaacgagtataaaatacacgaagaaaatgacttt ggacttcgaaattacttcgagataagcgaaattttgagataa |
Protein
Protein ID | pfu_aug1.0_808.1_22313.t1 |
---|---|
Definition | - |
>pfu_aug1.0_808.1_22313.t1 MYPFAFGSQVYFTFLQQLDLDIEKRMLDRETKDLTYTSMLEEKIKVIQELNNHLQSVIDSKSQLITRLQQPFVGDYIKLE AQYHRFASELFPQIATMMADFNNHLENITWNKSLSFDDGKLSFRIISIDFDDVLICLHQIPSQMGGLRLNEYKIHEENDF GLRNYFEISEILR |