Gene
Gene Model ID | pfu_aug1.0_8329.1_38732 |
---|---|
Locus | scaffold8329.1 : 37846 ... 43290 : + |
To GenomeBrowser | scaffold8329.1:37846..43290 |
Genes list of scaffold | scaffold8329.1 |
Synonym | pfu_aug2.0_32.1_06778 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_8329.1_38732.t1 | 1 | 1 | Fringe | 30 | 201 | 2.9e-12 | 46.3 | 2.5e-15 | 1.9e-11 | 43.7 |
pfu_aug1.0_8329.1_38732.t1 | 2 | 1 | Galactosyl_T | 77 | 142 | 3.4e-06 | 26.7 | 3.4e-08 | 0.00025 | 20.6 |
pfu_aug1.0_8329.1_38732.t1 | 2 | 2 | Galactosyl_T | 153 | 201 | 3.4e-06 | 26.7 | 0.0048 | 35.0 | 3.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_8329.1_38732.t1 | gi|322784921|gb|EFZ11692.1| | hypothetical protein SINV_02117, partial [Solenopsis invicta] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_8329.1_38732.t1 |
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Definition | - |
>pfu_aug1.0_8329.1_38732.t1 atgcgtgtacgtcgccggctcgtgtacagggtgactttagcggcggcattcctaagttttgtttattgtacaaagaagaa tgcaaaatacagtagaatcctatgttttgttatgacgacaccctcaaacattgccactaaggctatggcggtgaataaca cgtggggatcaagatgtgataaattactatttgtgaatgcggaagtcataacgtcactgcctactatggtcatagaagtg gaggaaggtagagaccacttaacaaagaaaacatacaaatctcttcagtatctttacaaacactacgtcgatagttacga ttggttcttaaaagcagacgacgacgcctacctcattatggaaaatctgcgtcatcttttggagagctacaattcccaga atgccgtgtatctaggtcatcacttccgtataggaacacgtcaaggatatatgtcaggtggaggcgggtttttattgagc gcgggagctttgaaagctatcaacgaaaaaggttatggggtagagcccatgtgtcaaatggatggtaaagacgaggatct tgatataggaatatgccttgatcatattggtgtgaaaacttattcgtccatagacaaatatggccgacaaagcttccatc cttttggtataatcaaatcactgacgtccagtattaccggcggtgagagttattactttgataggccaattaaagatgga cccgattgttgtagtcaactatcagtgtcttttcactacataaatccagtgcagatgtacttattagaattcatgcttta taaatccgttctccatgggaggcactatccaatcaaatccaaggataactttttcaaaccggaagtcgctactattccaa ataaggcagccaatgaaatcattcttccaccaaaatatttctggcatttcctcttcggcaggaggaagtatgttaacagt ggtaacaggaatggtagtgacctttatcttatagtatttgtgatattttatcagacactggttattgctaggtga |
Protein
Protein ID | pfu_aug1.0_8329.1_38732.t1 |
---|---|
Definition | - |
>pfu_aug1.0_8329.1_38732.t1 MRVRRRLVYRVTLAAAFLSFVYCTKKNAKYSRILCFVMTTPSNIATKAMAVNNTWGSRCDKLLFVNAEVITSLPTMVIEV EEGRDHLTKKTYKSLQYLYKHYVDSYDWFLKADDDAYLIMENLRHLLESYNSQNAVYLGHHFRIGTRQGYMSGGGGFLLS AGALKAINEKGYGVEPMCQMDGKDEDLDIGICLDHIGVKTYSSIDKYGRQSFHPFGIIKSLTSSITGGESYYFDRPIKDG PDCCSQLSVSFHYINPVQMYLLEFMLYKSVLHGRHYPIKSKDNFFKPEVATIPNKAANEIILPPKYFWHFLFGRRKYVNS GNRNGSDLYLIVFVIFYQTLVIAR |