Gene
Gene Model ID | pfu_aug1.0_8765.1_24474 |
---|---|
Locus | scaffold8765.1 : 15934 ... 27105 : - |
To GenomeBrowser | scaffold8765.1:15934..27105 |
Genes list of scaffold | scaffold8765.1 |
Synonym | pfu_aug2.0_90.1_00213 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_8765.1_24474.t1 | 3 | 1 | DEAD | 9 | 59 | 2.0e-10 | 40.4 | 1.1e-13 | 8.5e-10 | 38.3 |
pfu_aug1.0_8765.1_24474.t1 | 3 | 2 | DEAD | 152 | 198 | 2.0e-10 | 40.4 | 0.033 | 250.0 | 1.0 |
pfu_aug1.0_8765.1_24474.t1 | 3 | 3 | DEAD | 273 | 324 | 2.0e-10 | 40.4 | 0.26 | 1900.0 | -1.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_8765.1_24474.t1 | gi|260790599|ref|XP_002590329.1| | hypothetical protein BRAFLDRAFT_279393 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
adductorMuscle | 1 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_8765.1_24474.t1 |
---|---|
Definition | - |
>pfu_aug1.0_8765.1_24474.t1 atggatgaaaccattaacttcagggcagactcactccaaatactagttttagatgaggcagacaggatactggatatggg gtttgctaaggagatgaatgccataatagagaaccttcctaacaccagacaaactttacttttctcagccacacaaacaa agtcagtgaaggatttagctcgccttagtttaaaagatccagtgtatgtgtcagttcatgagaattcagaatatagcact cctgtccaactagagcagaactatatagtatgtgaactccatgacaagatgaacatgctgtggtccttcatcaaaaatca tctaaaaagcaaagtcctcgctttctttacaagttgtaaacagagatatatccattttacagataagtgtatgcattatc gagaacgagggagggcgaaatcttgcaactttggtgattccgaagagagaatgatacgagacaaaatagtattctctacg agtggcaaagtacaacaacttctccttcgcgaggacaacctcaacttgcaacgagcaatcaaaatatgccaatcatatga acaagctaataagcaagcacaagctatgcgtgaagatcaaggtcaagtacacaaaatcacgaaacatcagaaagatggta gacaaaggcaatctgatcgaccgcctaaggatcacaaacgtgaaaagcaacacattaatcgttcgactccgaaaccagaa gcaaaatcatgtaaattttgtgggtataaacatgtcatgcgaaaggaagattgcccagcatggggtaatgtctgtgatcg ttgccacggtttaaaccactttaagaaaaagtgtaaaaagaaaaaagtgcatgtagtaagtaaagatacatgggaagata gtgaagcatcttactccgagtccgattcatcacaggataacggcaaatggcttaaagctgtacatactcgaaataaggat ctcgtttccgctaaaatgtgtgtaaatgattgcgaagtatcatttcaaattgatagtgctgctgagataaacacaatttg tcaacgctatgtccgcaaagatcaagttcaacctacatcaatgaccttgactatgtttaatgaaaaaaatgcaaaatggg ttcttggcaaaatcgtaaagcaaatcgacaagtatacatatattgtgaaatcacaggaaggtgttacgtacagacgaaat cgtctacacattcgaccaaccgctgttgaagcagtcataagagataaatctccgatacgtgttgtcgaaccgaatattca agtatcgtatccagtgattcaggatcctagtcagaatccgattccgaaaattgtgaatgatacaagtcaaccgttgaaac ccagtgaaattgtacccgtaattacacctacatccgctccaactcaggaaaccgcaccgtcattgcgcagatctgaccgt atccgccgacgtcctgccaagtttgatgactatactacttaa |
Protein
Protein ID | pfu_aug1.0_8765.1_24474.t1 |
---|---|
Definition | - |
>pfu_aug1.0_8765.1_24474.t1 MDETINFRADSLQILVLDEADRILDMGFAKEMNAIIENLPNTRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENSEYST PVQLEQNYIVCELHDKMNMLWSFIKNHLKSKVLAFFTSCKQRYIHFTDKCMHYRERGRAKSCNFGDSEERMIRDKIVFST SGKVQQLLLREDNLNLQRAIKICQSYEQANKQAQAMREDQGQVHKITKHQKDGRQRQSDRPPKDHKREKQHINRSTPKPE AKSCKFCGYKHVMRKEDCPAWGNVCDRCHGLNHFKKKCKKKKVHVVSKDTWEDSEASYSESDSSQDNGKWLKAVHTRNKD LVSAKMCVNDCEVSFQIDSAAEINTICQRYVRKDQVQPTSMTLTMFNEKNAKWVLGKIVKQIDKYTYIVKSQEGVTYRRN RLHIRPTAVEAVIRDKSPIRVVEPNIQVSYPVIQDPSQNPIPKIVNDTSQPLKPSEIVPVITPTSAPTQETAPSLRRSDR IRRRPAKFDDYTT |