Gene
Gene Model ID | pfu_aug1.0_9.1_43393 |
---|---|
Locus | scaffold9.1 : 44738 ... 114025 : - |
To GenomeBrowser | scaffold9.1:44738..114025 |
Genes list of scaffold | scaffold9.1 |
Synonym | pfu_aug2.0_151.1_03714 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_9.1_43393.t1 | 4 | 1 | Spectrin | 3 | 45 | 4.3e-09 | 36.6 | 9.1e-05 | 0.23 | 11.7 |
pfu_aug1.0_9.1_43393.t1 | 4 | 2 | Spectrin | 174 | 278 | 4.3e-09 | 36.6 | 1.1e-11 | 2.7e-08 | 34.0 |
pfu_aug1.0_9.1_43393.t1 | 1 | 1 | RhoGEF | 327 | 497 | 8.5e-36 | 123.5 | 3.4e-39 | 8.5e-36 | 123.5 |
pfu_aug1.0_9.1_43393.t1 | 4 | 3 | Spectrin | 605 | 631 | 4.3e-09 | 36.6 | 0.27 | 670.0 | 0.6 |
pfu_aug1.0_9.1_43393.t1 | 4 | 4 | Spectrin | 954 | 974 | 4.3e-09 | 36.6 | 0.74 | 1800.0 | -0.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_9.1_43393.t1 | gi|242007895|ref|XP_002424753.1| | Huntingtin-associated protein-interacting protein, putative [Pediculus humanus corporis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_9.1_43393.t1 |
---|---|
Definition | - |
>pfu_aug1.0_9.1_43393.t1 atggcacaagtaactaacagagctgaatccatgatacagagtagccactataactctgacctggtgagggcaatcgcaga aaacgtaacgttcgcatggcaacagctgatgtatcatacggaagaacggcacaaactcgttatggcttccatgaactggt acaagacggcagaacaggtatggtcagtgctggagagtttggacagagattataaacgtgaggaagactggtgtagcaca gaacgtgtcgtaccgagcgagaaggcaaactacctactacagcttataaacaaacataacgaacagaaggaggctttcct caaggcttgcactcttgctagaagaacagctgaaacgttcctgaagtatgtcagtaggaatctccatacgtttggttcac agctcaagttcagaagtcccgaaaagcacgtcaaagcaacccttgaccaattactgcagcaggagaacattgttatagaa tattggacggtcaaaaagaagaagctggaacaatgtcatcaatatgtattatttgaacagagtgctaagcaggctataga ttggatcagagattacggtgagaaatatctacagacccataaagatgtcggttccaacgcacaagaaacagaaaacttgt taaaggaatactatgaattcaggagcagagccaaggaaacaaaagaaagtgtcaaactcctcctgtcattggccgatggc ttcgttgctaagggtaacatacatgctagtagtattatgcagtggtgtggagccgtggacaaacgctataaagatttttc ctcacggatggaaaagtatcgtcacaagctagagtctacactaggtgtcaaaggagaggagcctaaagaagaggagaagc agcgtcacagtgactcgtccatcgaggagaaagtcctccatcaaactcctaaagaactcacggaggagaaacgcagatct gctaggaggagggaatttatcatggcagaattattacagacagagagaacatatgttaaggacttggatgtgtgtttaaa gtgttatttaaacggcatgaaagatacgaggaacgatgtgcctcaaggaattgtgggaaaacataaagttatttttagca acattgaggaaatatatgaattccataacagtgttttcttgaaggagctagagaaatatgagactatacctgaagatgtg ggccattgctttgttacatgggcacagaagttttctatatatgtaacatactgtaaaaataaacctgactcaaatcaact gctagtggagcatgctggaggattctttgaggaactacaaggaagacataagttgaacgaaccgttagcttcctacctaa tcaaaccggtacagcgtatcaccaagtatcaactactgctgaaagatctgttatcctgctgcgagggtcacataggggaa attaaggatggtttagaggtaatgatgagcgtaccgaagaaggctaacgatgccatgcacctctcgctgctcgaaggtct cgaggagaaagttgaggccctcggtgatgttttcctccaggaccagtttaccgtatgggatccaaaacagctgattaaaa aggggcgtgatcggcatctcttcctgtttgatatgtgtctcattttttcgaaggaggtgaaagatagtaacggaaaagca aagtatcagtacaagttcagacttatgatttctgacgtaaacatcacagaacatatagagggagatgagacaaagtttgc tctatggacaggaagggctcctatctctgactatagaattattctgaagtccaaagacctagagaccaaacagaactggg tgaagaagttacgagaattgatgcaggagagaatgcagtatatgcatgaggcactgaaggacaaacaacctcagctgttc aaacctccacctaaatctttccatccgaccagacaagctccaatgggtctgattaaaagagagccaggtggtgaccttga ctctgatgaccttcccattgagagaagacgagggtccttcacctctatgatctccttggcaaccacggtaactaccgaca gcagtagtagcggaggagaaaaggacaggggtgacgtcacagtggtcatagaggattactctgcggcaaacaactcagaa ctgactgtcatcaaaggccagcaggtggagttactagatacagcgccccctggtgagcagaattggtgtctggttcgtat gatcaatgcagaggacggagaacctacccaggggctcgtacctatatcctcccttaaaatgatacctgccctacagagag cgaccaatagaaacagtatggacctagaagagacaatgggtttaccaaaggaacgcagcgcttcaccggtatccaaaagg aaaactagtttcaagaaatggttgaaagtaggtcaaggtaaaccagtcacagagaaaatggagaggaagtccgcctgtac catcatggagccacccaaaacagacctgcccaaaaaggtgttaataggtcccctagggtcagtcagaaaaaaggagccaa gtgaccagccggtgaagtcgcccgtggaccaagccgacgacgaggcccctgacatcaccatgcccccacccatggagata cagactcattttaccacaccccctgatggatcccccgaactgccgtcttcactaggactaaagacgccgactacagaccc tgttacgggaatagatctagagtctgaaatcgacaaactcgtgcagaaacgctcagatatgaacagcgacaacagatctg acgggggccaagcgtcatctgaatctgggggagaaaacaacgaggccgaagcagacgacggagagaaagaaaaagaaaaa tatatacagaaaagaagatgtgatttggaatcaagatttgactatagaaaaattgatgcagagagcacctag |
Protein
Protein ID | pfu_aug1.0_9.1_43393.t1 |
---|---|
Definition | - |
>pfu_aug1.0_9.1_43393.t1 MAQVTNRAESMIQSSHYNSDLVRAIAENVTFAWQQLMYHTEERHKLVMASMNWYKTAEQVWSVLESLDRDYKREEDWCST ERVVPSEKANYLLQLINKHNEQKEAFLKACTLARRTAETFLKYVSRNLHTFGSQLKFRSPEKHVKATLDQLLQQENIVIE YWTVKKKKLEQCHQYVLFEQSAKQAIDWIRDYGEKYLQTHKDVGSNAQETENLLKEYYEFRSRAKETKESVKLLLSLADG FVAKGNIHASSIMQWCGAVDKRYKDFSSRMEKYRHKLESTLGVKGEEPKEEEKQRHSDSSIEEKVLHQTPKELTEEKRRS ARRREFIMAELLQTERTYVKDLDVCLKCYLNGMKDTRNDVPQGIVGKHKVIFSNIEEIYEFHNSVFLKELEKYETIPEDV GHCFVTWAQKFSIYVTYCKNKPDSNQLLVEHAGGFFEELQGRHKLNEPLASYLIKPVQRITKYQLLLKDLLSCCEGHIGE IKDGLEVMMSVPKKANDAMHLSLLEGLEEKVEALGDVFLQDQFTVWDPKQLIKKGRDRHLFLFDMCLIFSKEVKDSNGKA KYQYKFRLMISDVNITEHIEGDETKFALWTGRAPISDYRIILKSKDLETKQNWVKKLRELMQERMQYMHEALKDKQPQLF KPPPKSFHPTRQAPMGLIKREPGGDLDSDDLPIERRRGSFTSMISLATTVTTDSSSSGGEKDRGDVTVVIEDYSAANNSE LTVIKGQQVELLDTAPPGEQNWCLVRMINAEDGEPTQGLVPISSLKMIPALQRATNRNSMDLEETMGLPKERSASPVSKR KTSFKKWLKVGQGKPVTEKMERKSACTIMEPPKTDLPKKVLIGPLGSVRKKEPSDQPVKSPVDQADDEAPDITMPPPMEI QTHFTTPPDGSPELPSSLGLKTPTTDPVTGIDLESEIDKLVQKRSDMNSDNRSDGGQASSESGGENNEAEADDGEKEKEK YIQKRRCDLESRFDYRKIDAEST |