Gene
Gene Model ID | pfu_aug1.0_9132.1_67996 |
---|---|
Locus | scaffold9132.1 : 17286 ... 20025 : + |
To GenomeBrowser | scaffold9132.1:17286..20025 |
Genes list of scaffold | scaffold9132.1 |
Synonym | pfu_aug2.0_812.1_07912 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_9132.1_67996.t1 | 1 | 1 | Beta-Casp | 1 | 89 | 5.5e-19 | 68.3 | 1.1e-22 | 8.0e-19 | 67.8 |
pfu_aug1.0_9132.1_67996.t1 | 1 | 1 | RMMBL | 103 | 138 | 5.0e-07 | 29.4 | 1.2e-10 | 8.7e-07 | 28.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_9132.1_67996.t1 | gi|260815130|ref|XP_002602327.1| | hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_9132.1_67996.t1 |
---|---|
Definition | - |
>pfu_aug1.0_9132.1_67996.t1 atgagtgtatatcagacctatatcaatgctatgaacgaaaaaataagacggcagatcaacatcagcaatccatttgtctt caaacacatatcaaatctcaaaagtatggaacactttgaggacatagggccctctgtagtactggccagccctggaatga tgcagagtggactttccagagaactgtttgagagctggtgtactgacaagagaaatggatgtattatagccggttactgt gtagagggaacattggcaaagcacatcctgtctgaaccagatgagatcatgaccatggccggacagaagttgcccctgaa gtgttcagtggattatatctccttttctgcacatacagactacaaacagaccagtgaatttatacgcatcctcaaacctt tacatgtggtctgtatctgtgtgtatttgtatggtattaaaaaccattttcatagcacattagtagacttgcattttata catgccaagacccaacgtcacaatattttatgtaatttttactgtgacatcctagcagattcgtga |
Protein
Protein ID | pfu_aug1.0_9132.1_67996.t1 |
---|---|
Definition | - |
>pfu_aug1.0_9132.1_67996.t1 MSVYQTYINAMNEKIRRQINISNPFVFKHISNLKSMEHFEDIGPSVVLASPGMMQSGLSRELFESWCTDKRNGCIIAGYC VEGTLAKHILSEPDEIMTMAGQKLPLKCSVDYISFSAHTDYKQTSEFIRILKPLHVVCICVYLYGIKNHFHSTLVDLHFI HAKTQRHNILCNFYCDILADS |