Gene
Gene Model ID | pfu_aug1.0_9494.1_24568 |
---|---|
Locus | scaffold9494.1 : 3443 ... 24765 : - |
To GenomeBrowser | scaffold9494.1:3443..24765 |
Genes list of scaffold | scaffold9494.1 |
Synonym | pfu_aug2.0_550.1_00879 |
Manual annotation
Study field | 20 basic cell biology |
---|---|
Gene name | elongation factor 1-alpha |
Description | Best hit to Crassostrea gigas EF1-alpha mRNA for elongation factor 1 alpha, complete cds (AB122066.1) by BLASTN search against NCBI nt database. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_9494.1_24568.t1 | 1 | 1 | GTP_EFTU | 5 | 237 | 0.0 | 189.7 | 0.0 | 0.0 | 189.2 |
pfu_aug1.0_9494.1_24568.t1 | 1 | 1 | GTP_EFTU_D2 | 260 | 326 | 1.0e-17 | 64.0 | 5.4e-21 | 1.2e-17 | 63.8 |
pfu_aug1.0_9494.1_24568.t1 | 1 | 1 | GTP_EFTU_D3 | 334 | 441 | 8.7e-37 | 125.2 | 1.1e-39 | 2.4e-36 | 123.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_9494.1_24568.t1 | gi|50980344|gb|AAT91089.1| | elongation factor 1-alpha [Pimephales promelas] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 6 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 2 |
mantle | 4 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 2 |
Transcript
Transcript ID | pfu_aug1.0_9494.1_24568.t1 |
---|---|
Definition | - |
>pfu_aug1.0_9494.1_24568.t1 atgggaaaagaaaagacccacatcaacatcgtcgtcattggtcatgtcgactccggtaaatccaccaccactggtcactt gatctacaagtgtggaggtattgacaagagaaccatcgagaagtttgagaaggaggctgctgagatgggaaaaggttcct tcaaatatgcctgggtattggacaaactgaaggcagagcgtgaacgtggtatcactattgatattgccctgtggaagttt gaaacaaccaaatactacattaccatcattgatgcccctggccacagagatttcatcaagaacatgatcacaggtacatc tcaggctgactgcgcagtgttgattgtggctgccggtgttggagaatttgaggctggtatttctaaaaacggacagactc gtgaacatgccttgttggccttcacattgggagtaaaacagctgatcgttggtgtcaacaagatggacagcactgaacca gcttattctgaggcacgttttactgaaattgaaaaagaagtcagcgcttatgtcaaaaagattggttataatcctaaaaa tgtggcatttgtaccaatttctggatggcatggagacaacatgcttgaggaatctgataatatgaaatggtttaaaggat ggtccattgagagaaaggagggaaatgccagtggtaaaacactgtttaatgctctggatgccattttacctcctcagaga ccaactgagaagcctcttcgtctgcctctacaggacgtatacaaaataggaggtattggaacagtgccagttggtagagt ggagactggtatacttaaaccaggaatggttgttacctttgctccagtcaatgtcactactgaagtaaaatctgtggaga tgcaccacgagtctttaccagaggctttacctggagataatgttggttttaacgtgaaaaacgtatctgtcaaagatgta aagagaggaaatgttgctggagacagcaaaagcgatccacccaagggagcaaagacattctatgcccaggtcattattct gaaccaccctggtgaaattcgcagtggttacgcacctgtcctcgattgtcacactgcccacattgcctgcaaatttactg aaatcaaggaaaaggtggaccgtcgtagcggtaaaaaacttgaagacaaccccaaatttgtcaaatctggtgatgctgcc atggttgacatgaccccccagaaaccaatgtgtgtagaagccttttcagaatacgccccacttggacgttttgctgtccg tgacatgagacagaccgtggctgttggagtcataaaaagcgttgagaaagcagaggccactggtggtaaggtaaccaaag cagcccagaaagctcagaagaagtga |
Protein
Protein ID | pfu_aug1.0_9494.1_24568.t1 |
---|---|
Definition | - |
>pfu_aug1.0_9494.1_24568.t1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF ETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP AYSEARFTEIEKEVSAYVKKIGYNPKNVAFVPISGWHGDNMLEESDNMKWFKGWSIERKEGNASGKTLFNALDAILPPQR PTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPVNVTTEVKSVEMHHESLPEALPGDNVGFNVKNVSVKDV KRGNVAGDSKSDPPKGAKTFYAQVIILNHPGEIRSGYAPVLDCHTAHIACKFTEIKEKVDRRSGKKLEDNPKFVKSGDAA MVDMTPQKPMCVEAFSEYAPLGRFAVRDMRQTVAVGVIKSVEKAEATGGKVTKAAQKAQKK |