Gene
Gene Model ID | pfu_aug1.0_9494.1_24570 |
---|---|
Locus | scaffold9494.1 : 33426 ... 41053 : + |
To GenomeBrowser | scaffold9494.1:33426..41053 |
Genes list of scaffold | scaffold9494.1 |
Synonym | pfu_aug2.0_550.1_00878 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_9494.1_24570.t1 | 1 | 1 | Ribosomal_S14 | 88 | 140 | 1.8e-18 | 65.6 | 3.1e-22 | 4.6e-18 | 64.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_9494.1_24570.t1 | gi|197260900|gb|ACH56945.1| | mitochondrial 28S ribosomal protein S14 [Simulium vittatum] | 3.0e-34 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
adductorMuscle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_9494.1_24570.t1 |
---|---|
Definition | - |
>pfu_aug1.0_9494.1_24570.t1 atggcggcgcccttgacagtttgtggaagattgattaattttgttcgtcccacttgcagtacatctgcacagtttttaaa aagcaatgaacacaagggacataatcttgagcagacacgtaccaaatatgtgagctggctgatgcataaagacaatagga ggaggaaaacctttgaggaacatgctcctgaaagacttcggatcaatgccattaggaaaaataccattttacccaaagaa ataagggaaatggcagataaagaaatcaaagaattacccctggacagttctattgtacgcttacataaacgatgcattct aacatcacgaccaaggggaaacgtgaaaaagtggcgcattagtcgcattatgttcagaagtctggcagattataacaaat tacctggagttactcgtgctgtgtggtag |
Protein
Protein ID | pfu_aug1.0_9494.1_24570.t1 |
---|---|
Definition | - |
>pfu_aug1.0_9494.1_24570.t1 MAAPLTVCGRLINFVRPTCSTSAQFLKSNEHKGHNLEQTRTKYVSWLMHKDNRRRKTFEEHAPERLRINAIRKNTILPKE IREMADKEIKELPLDSSIVRLHKRCILTSRPRGNVKKWRISRIMFRSLADYNKLPGVTRAVW |