Gene
Gene Model ID | pfu_aug1.0_9887.1_60693 |
---|---|
Locus | scaffold9887.1 : 15456 ... 17150 : + |
To GenomeBrowser | scaffold9887.1:15456..17150 |
Genes list of scaffold | scaffold9887.1 |
Synonym | pfu_aug2.0_2883.1_12304 |
Manual annotation
Study field | Reproduction |
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Gene name | C1q domain containing protein |
Description | Best hit to MgC1q66. 76 bits, 4e-12 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_9887.1_60693.t1 | 1 | 1 | C1q | 90 | 212 | 1.4e-25 | 89.7 | 1.3e-29 | 1.9e-25 | 89.2 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 3 |
>Adult tissues | |
mantle | 2 |
Transcript
Transcript ID | pfu_aug1.0_9887.1_60693.t1 |
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Definition | - |
>pfu_aug1.0_9887.1_60693.t1 atgcattgcgacacatcgaaaaaattttcggacagactagatccattcaaacgatacaattttgatataaagcaaatgtt attcatacctggctattatcaaggaagattacatgacaaattggatagactcctcggaatcgaatcaaaagatggaacac aacgaagacttctatccagactggaggctctagagaagttggtaaagaaacataagaaggaaaacgacaggagattcctc gataaaagtgatgataaaaaaaccatcgcatttactgtatcgtcatcgaagaatttagaaaatcacaacaaccagagaat catctacgacaaggtgatcacaaacacaggttatgcctacaacaaaaccacaggtatatttacctgtcctgtgtcaggta catacgtcttcacttggtctaccatgtctagttctgccaaacaatattgtattgcgttcatctaccataacggtcacaag ctgatgatgacacacagttatgaaaatacctatggttacaatgaagtagccagcaataccatggtgctctcattgaagaa gaacgaacttgtttggattgggacaactcgtggtacatcctgctatggctacccctacacgggattctctggttggaaat tataa |
Protein
Protein ID | pfu_aug1.0_9887.1_60693.t1 |
---|---|
Definition | - |
>pfu_aug1.0_9887.1_60693.t1 MHCDTSKKFSDRLDPFKRYNFDIKQMLFIPGYYQGRLHDKLDRLLGIESKDGTQRRLLSRLEALEKLVKKHKKENDRRFL DKSDDKKTIAFTVSSSKNLENHNNQRIIYDKVITNTGYAYNKTTGIFTCPVSGTYVFTWSTMSSSAKQYCIAFIYHNGHK LMMTHSYENTYGYNEVASNTMVLSLKKNELVWIGTTRGTSCYGYPYTGFSGWKL |