Gene
Gene Model ID | pfu_aug1.0_9985.1_17557 |
---|---|
Locus | scaffold9985.1 : 15396 ... 49427 : + |
To GenomeBrowser | scaffold9985.1:15396..49427 |
Genes list of scaffold | scaffold9985.1 |
Synonym | pfu_aug2.0_49.1_30074 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_9985.1_17557.t1 | 1 | 1 | Arrestin_N | 7 | 157 | 0.0 | 156.6 | 0.0 | 0.0 | 156.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_9985.1_17557.t1 | gi|261289371|ref|XP_002603129.1| | hypothetical protein BRAFLDRAFT_199194 [Branchiostoma floridae] | 1.4013e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_9985.1_17557.t1 |
---|---|
Definition | - |
>pfu_aug1.0_9985.1_17557.t1 atggggaagctgagagtgtttgacattgttctagacaatcatcagggagtatactttgctgggcagcatgtaaacggcag ggtcattgtggagcttgatgctccaatgaagatgagagaaatacggttgacattcaaaggtttggcttatgttcattgga ccgagtcccatagtactggatcagggaaaaataggcgtacccacactcgacactactctgcaacagaaacatattttcac caaaaagtaccagtctatggcttaggtatgggaagtggagaaaataacaatcttccacaaggacagcatgcttttccatt cagctttattctcccaccatctctaccatcatcatttgagggaacttggggttatgtgcgctacaccatcaaagcaacca tagacaaaccctggaagtttgatcatgatacaaaacgtccattcacagtggttgctttactagatctgaatctacaacca aatgccatggatatttatagccttatggatgtaataaataatgatttttacctcagtactaacagtcccctgattggact gaggatcaaggataatgggagtgatcatcctctataa |
Protein
Protein ID | pfu_aug1.0_9985.1_17557.t1 |
---|---|
Definition | - |
>pfu_aug1.0_9985.1_17557.t1 MGKLRVFDIVLDNHQGVYFAGQHVNGRVIVELDAPMKMREIRLTFKGLAYVHWTESHSTGSGKNRRTHTRHYSATETYFH QKVPVYGLGMGSGENNNLPQGQHAFPFSFILPPSLPSSFEGTWGYVRYTIKATIDKPWKFDHDTKRPFTVVALLDLNLQP NAMDIYSLMDVINNDFYLSTNSPLIGLRIKDNGSDHPL |