Gene
Gene Model ID | pfu_aug1.0_9985.1_17562 |
---|---|
Locus | scaffold9985.1 : 134573 ... 148142 : - |
To GenomeBrowser | scaffold9985.1:134573..148142 |
Genes list of scaffold | scaffold9985.1 |
Synonym | NA |
Manual annotation
Study field | other |
---|---|
Gene name | ribosomal protein S6 |
Description | GenBank: ACY71281.1 ribosomal protein S6 [Chrysomela tremula] |
mRNA evidence |
Study field | other |
---|---|
Gene name | ribosomal protein S6 |
Description | GenBank: ACY71281.1 ribosomal protein S6 [Chrysomela tremula] |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_9985.1_17562.t1 | 1 | 1 | Ribosomal_S6e | 12 | 94 | 8.59977e-42 | 141.7 | 1.4013e-45 | 1.70006e-41 | 140.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_9985.1_17562.t1 | gi|264667391|gb|ACY71281.1| | ribosomal protein S6 [Chrysomela tremula] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_9985.1_17562.t1 |
---|---|
Definition | - |
>pfu_aug1.0_9985.1_17562.t1 cactctgtgacatctcatttgttagaattatatttttacagggatacgtcctaagaatcgcaggtggaaacgacaaacag ggatttccaatgaagcaaggtgtcctgacaaatgtacgagttcgtcttcttctcagtaagggtcattcctgcttccgtcc aaggcgatctggcgagaggcgaaggaagtccgtgaggggatgcattgtagacagtaatctgagtgtattagccatggtta ttgttaagaaaggtgaaaaggaaatccctggattgactgataccacagttccaagacggcttgggccaaaacgtgccagc aaaatcaggaagctgtttaacttatcgaaggaggatgatgtccgtcaatatgttgtcagaagacccctggcccccaaaga gggcaaagaaagaatttttgccaagtttattgtatctgattggtcaatccgcttatttcttgaatctactgagatgggaa aatga |
Protein
Protein ID | pfu_aug1.0_9985.1_17562.t1 |
---|---|
Definition | - |
>pfu_aug1.0_9985.1_17562.t1 LCDISFVRIIFLQGYVLRIAGGNDKQGFPMKQGVLTNVRVRLLLSKGHSCFRPRRSGERRRKSVRGCIVDSNLSVLAMVI VKKGEKEIPGLTDTTVPRRLGPKRASKIRKLFNLSKEDDVRQYVVRRPLAPKEGKERIFAKFIVSDWSIRLFLESTEMGK |